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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAAGCAGGGAAAGCTCCTGACGTCTTCTATTGCTTGCGGCTTTTGGAAGCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttcttgaacttgcattctgtttctatgagaaaaagaaaaaaaagaagaagaaaagaaaagaaaacagataacttatcagacgatgtctaccat...

Basic information

species Physcomitrella patens
transcript PP1S215_28V6.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S215_28V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: GLYMA02G04320.1 (Glycine max), 5'ss of exon 14
AGAAAGCAGGGAAAGCTCCTGACGTCTTCTATTGCTTGCGGCTTTTGGAAGCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttcttgaacttgcattc-----tgtttctatgagaaaaagaaaaaaaagaagaagaaaagaaaagaaaacagataacttatcagacgatgtctaccat
|  | || || || | ||| || || | ||| ||| |   |||||||||||| ||||| || || |||||||| |||||||||||||| |||||||| |||||||   |  |  | ||    ||     | |  |  |                |||   |    | |     |  |  ||   || |||  | |||   |    
AACAGGCTGGAAAGGTTCCAGATGTTTACTACTGCCTCAAGCTTTTGGAAGCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaacttatacatttattctcatgtttatccccttttcttttcctttctttagagtgattccacatgcctattcctatggttt-tcatgcaatgagaa----

upper sequence: PP1S215_28V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: GLYMA01G03260.2 (Glycine max), 5'ss of exon 13
AGAAAGCAGGGAAAGCTCCTGACGTCTTCTATTGCTTGCGGCTTTTGGAAGCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttcttgaacttgcattctgtt-tctatgagaaaaagaaaaaaaagaagaagaaaagaaaagaaaacagataacttatcagacgatgtctaccat-
|  | || |  || | ||| || || ||||| ||| |    ||||||||||| ||||| || || |||||||| |||||||||||||| |||| ||| ||||||||  |  |  | ||   ||||| | | ||| |   |                       | |   |  |   |  | |||    | |||| |  ||| 
AACAGGCTGCAAAGGTTCCAGATGTTTTCTACTGCCTCAAACTTTTGGAAGCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatacttatacatttattttctgatgtttataaattatccccttttctttgcctttctttagagtgatcccacttgcctattc--ccatgtttgtcatg

upper sequence: PP1S215_28V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: Vv00s0225g00130.t01 (Vitis vinifera), 5'ss of exon 13
AGAAAGCAGGGAAAGCTCCTGACGTCTTCTATTGCTTGCGGCTTTTGGAAGCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatctt---cttgaa-cttgcattctgtttctatgagaaaaagaaaaaaaagaagaagaaaagaaaagaaaacagataacttatcagacgatgtctaccat
| || || || ||||   |||| || ||||| ||| |   ||| |||||||| ||||||||||| ||||| || |||||||||||||| |||||||| |||||  | ||   ||||   ||| | || |  ||  |  |           |        | ||            |    ||| | |||    |    ||    
AAAAGGCTGGTAAAGTGGCTGATGTTTTCTACTGCCTCAAGCTCTTGGAAGCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaattttttcccttgtttcttccgttgtaatttcaacaactgtcttctcattcctttcacaatgtttctacttgcgtgaaacctttcatgttactgata----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162186161|gb|FC361365.1|FC361365
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162177268|gb|FC353425.1|FC353425
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162151905|gb|FC328151.1|FC328151
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162153917|gb|FC329424.1|FC329424
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162267037|gb|FC441838.1|FC441838
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162186493|gb|FC363257.1|FC363257
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162217936|gb|FC393932.1|FC393932
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162186626|gb|FC363598.1|FC363598
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|37824967|gb|BJ583033.1|BJ583033
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162178884|gb|FC354816.1|FC354816
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162186047|gb|FC361875.1|FC361875
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|19783258|gb|BQ039985.1|BQ039985
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162207831|gb|FC384124.1|FC384124
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162178100|gb|FC354402.1|FC354402
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162177755|gb|FC354589.1|FC354589
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162188179|gb|FC363945.1|FC363945
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162269856|gb|FC445386.1|FC445386
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162214586|gb|FC390617.1|FC390617
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCGGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162178885|gb|FC354817.1|FC354817
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTC
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTC
EST: gi|162176653|gb|FC352498.1|FC352498
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162188180|gb|FC363946.1|FC363946
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162186492|gb|FC363256.1|FC363256
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162179082|gb|FC356483.1|FC356483
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162184663|gb|FC361901.1|FC361901
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162189252|gb|FC366748.1|FC366748
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162189251|gb|FC366747.1|FC366747
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162253479|gb|FC430113.1|FC430113
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162253480|gb|FC430114.1|FC430114
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162217937|gb|FC393933.1|FC393933
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGC
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGC
EST: gi|37825494|gb|BJ583560.1|BJ583560
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162166510|gb|FC343207.1|FC343207
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162151637|gb|FC327766.1|FC327766
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162155909|gb|FC332458.1|FC332458
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162181981|gb|FC356852.1|FC356852
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|208376494|gb|DC922525.1|DC922525
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
EST: gi|162267038|gb|FC441839.1|FC441839
EST:     GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGG                         GACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG
genomic: GCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 77

AGAAAGCAGGGAAAGCTCCTGACGTCTTCTATTGCTTGCGGCTTTTGGAAGCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttc ... tgttgtgcagGACCTTTCACGTGCGGACAACAATTTTACCCTCGGAGAGAGACATGCCTGGAATCATGGAAAGCTTCAAGAAGTTTAACGCGGACTTCATGGCACAACAT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAAAGCAGGGAAAGCTCCTGACGTCTTCTATTGCTTGCGGCTTTTGGAAGCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttcttgaacttgcattctgtttctatgagaaaaagaaaaaaaagaagaagaaaagaaaagaaaacagataacttatcagacgatgtctaccat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaagaaa