1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAGgtaacattcaaaacctaaacctcacaaagtccaatttttaaaagatatttacagagatcaatttatggtttaaaataatcatgtttgttttgcgcaattt...
species | Physcomitrella patens |
transcript | PP1S189_118V6.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GGGAGTTCACCATGTTGGAGCTTGCTGGCTTACTCAAGGAG CTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGATEST: gi|208390897|gb|DC945914.1|DC945914
genomic: GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAGgtaacattca ... caaattgcagCTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGAT
EST: GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG CTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGATEST: gi|37850860|gb|BJ608868.1|BJ608868
genomic: GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAGgtaacattca ... caaattgcagCTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGAT
EST: GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG CTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGATEST: gi|67692844|gb|BJ953077.1|BJ953077
genomic: GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAGgtaacattca ... caaattgcagCTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGAT
EST: GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG CTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGATEST: gi|67697660|gb|BJ957893.1|BJ957893
genomic: GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAGgtaacattca ... caaattgcagCTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGAT
EST: GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG CTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGATEST: gi|208385608|gb|DC948967.1|DC948967
genomic: GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAGgtaacattca ... caaattgcagCTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGAT
EST: GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG CTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGATEST: gi|208371855|gb|DC951847.1|DC951847
genomic: GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAGgtaacattca ... caaattgcagCTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGAT
EST: GCTTAGTCAAGGAG CTGATCGAGCCTTCTGCNGAGACTAAAATCGNTGAGAACACTCTCGATGATEST: gi|37843082|gb|BJ601090.1|BJ601090
genomic: GCTTAGTCAAGGAGgtaacattca ... caaattgcagCTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGAT
EST: GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG CTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGATEST: gi|208385977|gb|DC956493.1|DC956493
genomic: GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAGgtaacattca ... caaattgcagCTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGAT
EST: GGGAGTTCACCATGTTGGAGCNTGCTGGCTTAGTCAAGGAG CTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGATEST: gi|208370456|gb|DC952159.1|DC952159
genomic: GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAGgtaacattca ... caaattgcagCTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGAT
EST: GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG CTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGATEST: gi|37830721|gb|BJ588733.1|BJ588733
genomic: GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAGgtaacattca ... caaattgcagCTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGAT
EST: GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG CTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGATEST: gi|208371231|gb|DC956009.1|DC956009
genomic: GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAGgtaacattca ... caaattgcagCTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGAT
EST: GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAG CTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGAT
genomic: GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAGgtaacattca ... caaattgcagCTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAGTTCACCATGTTGGAGCTTGCTGGCTTAGTCAAGGAGgtaacattcaaaacctaaacctcacaaagtccaatttttaaaagatatttacagagatcaatttatggtttaaaataatcatgtttgttttgcgcaattt
- - - - - - - TTGGAG
- - - - - - - - GGAGCT
- - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagata