1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CAACTTGTTCCGGGTGTTTGGGGCCGCTACCGGAAGTGAGGAAGCGTCAACCTTGGAAGCTAGCAAGACTCCAAACAGgtgtagtaaatgtgcttataggctgaatactcgaattgttttgatttgaaatcgtccaaatgctttgatatggtcagtattgcttaaggattatatccag...
species | Physcomitrella patens |
transcript | PP1S167_51V6.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ACCGGAAGTGAGGAAGCGTCAACCTTGGAAGCTAGCAAGACTCCAAACAG GCGTATCGTGACACCTCCCTCAAAAGCTGGAAGTCGACTAGCCAATCTTGCEST: gi|37836637|gb|BJ594645.1|BJ594645
genomic: ACCGGAAGTGAGGAAGCGTCAACCTTGGAAGCTAGCAAGACTCCAAACAGgtgtagtaaa ... ataactgcagGCGTATCGTGACACCTCCCTCAAAAGCTGGAAGTCGACTAGCCAATCTTGC
EST: ACCGGAAGTGAGGAAGCGTCAACCTTGGAAGCTAGCAAGACTCCAAACAG GCGTATCGTGACACCTCCCTCAAAAGCTGGAAGTCGACTAGCCAATCTTGCEST: gi|162181126|gb|FC357285.1|FC357285
genomic: ACCGGAAGTGAGGAAGCGTCAACCTTGGAAGCTAGCAAGACTCCAAACAGgtgtagtaaa ... ataactgcagGCGTATCGTGACACCTCCCTCAAAAGCTGGAAGTCGACTAGCCAATCTTGC
EST: ACCGGAAGTGAGGAAGCGTCAACCTTGGAAGCTAGCAAGACTCCAAACAG GCGTATCGTGACACCGCCCTCAAAAGCTGGAAGTCGACTAGCCAATCTTGCEST: gi|162164628|gb|FC341923.1|FC341923
genomic: ACCGGAAGTGAGGAAGCGTCAACCTTGGAAGCTAGCAAGACTCCAAACAGgtgtagtaaa ... ataactgcagGCGTATCGTGACACCTCCCTCAAAAGCTGGAAGTCGACTAGCCAATCTTGC
EST: ACCGGAAGTGAGGAAGCGTCAACCTTGGAAGCTAGCAAGACTCCAAACAG GCGTATCGTGACACCGCCCTCAAAAGCTGGAAGTCGACTAGCCAATCTTGC
genomic: ACCGGAAGTGAGGAAGCGTCAACCTTGGAAGCTAGCAAGACTCCAAACAGgtgtagtaaa ... ataactgcagGCGTATCGTGACACCTCCCTCAAAAGCTGGAAGTCGACTAGCCAATCTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACTTGTTCCGGGTGTTTGGGGCCGCTACCGGAAGTGAGGAAGCGTCAACCTTGGAAGCTAGCAAGACTCCAAACAGgtgtagtaaatgtgcttataggctgaatactcgaattgttttgatttgaaatcgtccaaatgctttgatatggtcagtattgcttaaggattatatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA