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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCATTTCAATAGATGATATGGCTGGCGGTACTTTCACTATATCCAACGGTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccaggctttttacagcttgcgaatgtatgatatctgggttatgtacctataagataaacaacgatctgagtttcttttctgaagtaaaggtgca...

Basic information

species Physcomitrella patens
transcript PP1S154_6V6.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S154_6V6.2 (Physcomitrella patens), 5'ss of exon 12
lower sequence: GRMZM2G079538_T01 (Zea mays), 5'ss of exon 11
GAGCATTTCAATAGATGATATGGCTGGCGGTACTTTCACTATATCCAACGGTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccaggctttttacagcttgcgaatgtatgatatctgggttatgtacctataagataaacaacgatctgagtttcttttctgaagtaaaggtgca
|    | ||||| ||||| ||||| || || || ||||| || ||||||||||| |||||||| || ||| ||||||| || || || ||||| |||||||||| | | |    ||||    | || |    |  || | ||  | |||||  | |    | | |    || |||      | | |||| |  ||     
GGCGCTCTCAATTGATGACATGGCAGGTGGAACATTCACCATCTCCAACGGTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctgcacatttatcagtagcaa---cacaat-tttgtatcatgtagatgtttattgatctgaaatgtga----tctatgtgaattgcag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162188817|gb|FC364831.1|FC364831
EST:     ATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: ATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|18340511|gb|BJ172539.1|BJ172539
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|37822581|gb|BJ580647.1|BJ580647
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|208368131|gb|DC947691.1|DC947691
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|162173629|gb|FC349597.1|FC349597
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|162195145|gb|FC368820.1|FC368820
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|37853268|gb|BJ611276.1|BJ611276
EST:     TGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: TGGCGTCTATGGGAGTCTCATCAGCACTCCCATTA-TTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|162190098|gb|FC366672.1|FC366672
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|162163853|gb|FC340075.1|FC340075
EST:     TATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: TATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|162156509|gb|FC332117.1|FC332117
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|18337155|gb|BJ169179.1|BJ169179
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|37853494|gb|BJ611502.1|BJ611502
EST:     GTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|37834338|gb|BJ592350.1|BJ592350
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|162188818|gb|FC364832.1|FC364832
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|37843401|gb|BJ601409.1|BJ601409
EST:     TGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: TGGCGTCTATGGGAGTCTCATCAGCACTCCCATTA-TTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|37830298|gb|BJ588310.1|BJ588310
EST:     GTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|162163854|gb|FC340076.1|FC340076
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|67724548|gb|BJ974807.1|BJ974807
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|208360677|gb|DC946429.1|DC946429
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|37826547|gb|BJ584559.1|BJ584559
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|37848492|gb|BJ606500.1|BJ606500
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA