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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCTGGAACCACTATTGTCACAGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGGgtaagttcgatgacgaggtttgttgcacttatgttcattgatgtgttatgagatcgttggtaatttgcaaaacgaaagaaatggacttcacaagaatatt...

Basic information

species Physcomitrella patens
transcript PP1S152_87V6.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S152_87V6.2 (Physcomitrella patens), 5'ss of exon 12
lower sequence: GLYMA20G32030.1 (Glycine max), 5'ss of exon 11
CATCCTGGAACCACTATTGTCACAGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGGgta------agttcga--tgacgaggtttgt----tgcacttatgttcattgatgtgttatgagatcgttggtaatttgcaaaac---gaaagaaatggacttcacaagaatatt--------------------------------------
||||||||||| ||||||||||||||||||||||| || ||||| ||||| || || |||||  ||||||| ||||      | |   |  || |  | | | |    | | ||| |   | ||  |   ||| ||| ||  ||  || |   |   |    |  ||| || |  | ||  ||| ||                                       
CATCCTGGAACAACTATTGTCACAGACAGTGTGACTTCTGATGGGCTTACCACGTTTATTGAGAAGAAACTTGgtatggaggaatctaaactggcatgatctttagtctacccttctcacctttttttctttaagagttcactgtaaactaaaatcccttttattgaattgtaaattacttgaa-atgagatagtgctaataacttgccaatactgtttgtctcag

upper sequence: PP1S152_87V6.2 (Physcomitrella patens), 5'ss of exon 12
lower sequence: GLYMA10G35490.2 (Glycine max), 5'ss of exon 11
CATCCTGGAACCACTATTGTCACAGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGGgta------agttcga--tgac--gaggtttgttgcacttatgtt-cattgatgtgttatgagatcgttggtaatttgcaaaac--gaaagaaatggacttcacaagaatatt------------------------------------------------
||||||||||| ||||||||||||||||||||||| || ||||| ||||| || || |||||  ||||||| ||||      | |   |  || |  ||  |||  |  ||   | |  | ||  |   ||| ||| ||  ||  || |   |   |  |     | || | || |   ||| |||                                                
CATCCTGGAACAACTATTGTCACAGACAGTGTGACTTCTGATGGGCTTACCACGTTTATTGAGAAGAAACTTGgtatggaggaatctaaactggcatgatctttagtctacccttctcaccttctttctttaagagttcactgtaaactaaaatcccttgcttttattgaatttgaatggaaaatttcttgaaatgagatagtgttaataacttgctaatgttatatgtcttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162196876|gb|FC375153.1|FC375153
EST:     AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGG                         GTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
genomic: AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGGgtaagttcga ... actggaatagGTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
EST: gi|162215700|gb|FC391415.1|FC391415
EST:     AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGG                         GTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
genomic: AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGGgtaagttcga ... actggaatagGTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG