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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCTGGAACCACTATTGTCACAGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGGgtaagttcgatgacgaggtttgttgcacttatgttcattgatgtgttatgagatcgttggtaatttgcaaaacgaaagaaatggacttcacaagaatatt...

Basic information

species Physcomitrella patens
transcript PP1S152_87V6.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S152_87V6.2 (Physcomitrella patens), 5'ss of exon 12
lower sequence: GLYMA20G32030.1 (Glycine max), 5'ss of exon 11
CATCCTGGAACCACTATTGTCACAGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGGgta------agttcga--tgacgaggtttgt----tgcacttatgttcattgatgtgttatgagatcgttggtaatttgcaaaac---gaaagaaatggacttcacaagaatatt--------------------------------------
||||||||||| ||||||||||||||||||||||| || ||||| ||||| || || |||||  ||||||| ||||      | |   |  || |  | | | |    | | ||| |   | ||  |   ||| ||| ||  ||  || |   |   |    |  ||| || |  | ||  ||| ||                                       
CATCCTGGAACAACTATTGTCACAGACAGTGTGACTTCTGATGGGCTTACCACGTTTATTGAGAAGAAACTTGgtatggaggaatctaaactggcatgatctttagtctacccttctcacctttttttctttaagagttcactgtaaactaaaatcccttttattgaattgtaaattacttgaa-atgagatagtgctaataacttgccaatactgtttgtctcag

upper sequence: PP1S152_87V6.2 (Physcomitrella patens), 5'ss of exon 12
lower sequence: GLYMA10G35490.2 (Glycine max), 5'ss of exon 11
CATCCTGGAACCACTATTGTCACAGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGGgta------agttcga--tgac--gaggtttgttgcacttatgtt-cattgatgtgttatgagatcgttggtaatttgcaaaac--gaaagaaatggacttcacaagaatatt------------------------------------------------
||||||||||| ||||||||||||||||||||||| || ||||| ||||| || || |||||  ||||||| ||||      | |   |  || |  ||  |||  |  ||   | |  | ||  |   ||| ||| ||  ||  || |   |   |  |     | || | || |   ||| |||                                                
CATCCTGGAACAACTATTGTCACAGACAGTGTGACTTCTGATGGGCTTACCACGTTTATTGAGAAGAAACTTGgtatggaggaatctaaactggcatgatctttagtctacccttctcaccttctttctttaagagttcactgtaaactaaaatcccttgcttttattgaatttgaatggaaaatttcttgaaatgagatagtgttaataacttgctaatgttatatgtcttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162170485|gb|FC347644.1|FC347644
EST:     AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGG                         GTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
genomic: AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGGgtaagttcga ... actggaatagGTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
EST: gi|162198122|gb|FC373072.1|FC373072
EST:     AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGG                         GTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
genomic: AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGGgtaagttcga ... actggaatagGTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
EST: gi|162196621|gb|FC374911.1|FC374911
EST:     AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGG                         GTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
genomic: AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGGgtaagttcga ... actggaatagGTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
EST: gi|37850442|gb|BJ608450.1|BJ608450
EST:     AGACAGTGTGACNTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGG                         GTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
genomic: AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGGgtaagttcga ... actggaatagGTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
EST: gi|162215686|gb|FC391414.1|FC391414
EST:     GCCTTACGACTTTCATTGAACAGAAACTGG                         GTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
genomic: GCCTTACGACTTTCATTGAACAGAAACTGGgtaagttcga ... actggaatagGTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
EST: gi|18332811|gb|BJ164824.1|BJ164824
EST:     CTTTCATTGANCAGAAACTGG                         GTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
genomic: CTTTCATTGAACAGAAACTGGgtaagttcga ... actggaatagGTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
EST: gi|162192137|gb|FC368286.1|FC368286
EST:     AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGG                         GTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
genomic: AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGGgtaagttcga ... actggaatagGTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
EST: gi|162192138|gb|FC368287.1|FC368287
EST:     AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGG                         GTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
genomic: AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGGgtaagttcga ... actggaatagGTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
EST: gi|162196875|gb|FC375152.1|FC375152
EST:     AGACAGTGTGACCTCGGATGGCCTTACGACTTTCA-TGAACAGAAACTGG                         GTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
genomic: AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGGgtaagttcga ... actggaatagGTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
EST: gi|162196876|gb|FC375153.1|FC375153
EST:     AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGG                         GTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
genomic: AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGGgtaagttcga ... actggaatagGTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
EST: gi|162244980|gb|FC424938.1|FC424938
EST:     AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGG                         GTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
genomic: AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGGgtaagttcga ... actggaatagGTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
EST: gi|162170471|gb|FC347643.1|FC347643
EST:     AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGG                         GT-GCAAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAA
genomic: AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGGgtaagttcga ... actggaatagGTGGC-AAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAA
EST: gi|162215700|gb|FC391415.1|FC391415
EST:     AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGG                         GTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
genomic: AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGGgtaagttcga ... actggaatagGTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
EST: gi|208381985|gb|DC923844.1|DC923844
EST:     AGACAGTGTGACCTCGGATGGCCTTACGACTTTCA-TGAACAGAAACTGG                         GTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG
genomic: AGACAGTGTGACCTCGGATGGCCTTACGACTTTCATTGAACAGAAACTGGgtaagttcga ... actggaatagGTGGCAAACATCATCGCTTCAAGAGGGGTTATAAGAATGTCATTGATGAAG