1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TCCATCAGTGTGCCGAGAAGGACTTGCAGACATTCCTTGAAGGAGACAATCCCACCAGCTCATTCAATGATTTCCGCACCAAACTCGCCGGCTTGACCAGgtgcttacatttgttatcgatgattggtcctttacaagccaaaagttttcaacagactagaatagttcattcaggtttctacgcctaaatctatatccttaacaggagacataattggcttattgtcatttaatttaatttaatttaatttttccag
species | Physcomitrella patens |
transcript | PP1S114_2V6.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CCCACCAGCTCATTCAATGATTTCCGCACCAAACTCGCCGGCTTGACCAG TGTGACGAGGACATACTTCGAGAACCTGGTTCGCGCGTTAGAGAATAATCTEST: gi|37823434|gb|BJ581500.1|BJ581500
genomic: CCCACCAGCTCATTCAATGATTTCCGCACCAAACTCGCCGGCTTGACCAGgtgcttacat ... atttttccagTGTGACGAGGACATACTTCGAGAACCTGGTTCGCGCGTTAGAGAATAATCT
EST: AACTCGCCGGCTTGACCAG TGTGACGAGGACATACTTCGAGAACCNTGGTTCGCGCGTTAGAGAATAATCEST: gi|162206543|gb|FC382912.1|FC382912
genomic: AACTCGCCGGCTTGACCAGgtgcttacat ... atttttccagTGTGACGAGGACATACTTCGAGAACC-TGGTTCGCGCGTTAGAGAATAATC
EST: GATTTCCGCACCAAACTCGCCGGCTTGACCAG TGTGACGAGGACATACTTCGAGAACCTGGTTCGCGCGTTAGAGAATAATCTEST: gi|18337135|gb|BJ169159.1|BJ169159
genomic: GATTTCCGCACCAAACTCGCCGGCTTGACCAGgtgcttacat ... atttttccagTGTGACGAGGACATACTTCGAGAACCTGGTTCGCGCGTTAGAGAATAATCT
EST: TCATTCAATGATTTCCGCACCAAACTCGCCGGCTTGACCAG TGTGACGAGGACATACTTCGAGAACCTGGTTCGCGCGTTAGAGAATAATCTEST: gi|162194720|gb|FC371567.1|FC371567
genomic: TCATTCAATGATTTCCGCACCAAACTCGCCGGCTTGACCAGgtgcttacat ... atttttccagTGTGACGAGGACATACTTCGAGAACCTGGTTCGCGCGTTAGAGAATAATCT
EST: CCCACCAGCTCATTCAATGATTTCCGCACCAAACTCGCCGGCTTGACCAG TGTGACGAGGACATACTTCGAGAACCTGGTTCGCGCGTTAGAGAATAATCTEST: gi|37832996|gb|BJ591008.1|BJ591008
genomic: CCCACCAGCTCATTCAATGATTTCCGCACCAAACTCGCCGGCTTGACCAGgtgcttacat ... atttttccagTGTGACGAGGACATACTTCGAGAACCTGGTTCGCGCGTTAGAGAATAATCT
EST: GCCGGCTTGACCAG TGTGACGAGGACATACTTCGAGANCCTGGTTCGCGCGTTAGAGAATAATCTEST: gi|162279387|gb|FC455934.1|FC455934
genomic: GCCGGCTTGACCAGgtgcttacat ... atttttccagTGTGACGAGGACATACTTCGAGAACCTGGTTCGCGCGTTAGAGAATAATCT
EST: CCCACCAGCTCATTCAATGATTTCCGCACCAAACTCGCCGGCTTGACCAG TGTGACGAGGACATACTTCGAGAACCTGGTTCGCGCGTTAGAGAATAATCT
genomic: CCCACCAGCTCATTCAATGATTTCCGCACCAAACTCGCCGGCTTGACCAGgtgcttacat ... atttttccagTGTGACGAGGACATACTTCGAGAACCTGGTTCGCGCGTTAGAGAATAATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCATCAGTGTGCCGAGAAGGACTTGCAGACATTCCTTGAAGGAGACAATCCCACCAGCTCATTCAATGATTTCCGCACCAAACTCGCCGGCTTGACCAGgtgcttacatttgttatcgatgattggtcctttacaagccaaaagttttcaacagactagaatagttcattcaggtttctacgcctaaatctatatccttaacaggagacataattggcttattgtcatttaatttaatttaatttaatttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA