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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGGGAGAGAAAGAGGGTTTCAAAGTTAGTGTTGCCAAGACTAGCTTCAAAGCCAACACTAAGGCTCTCGCTGAGAATGAAGGCGATGGGCTGGCTAAGgtaccggctggtgttacaacttttggcttgctctatattttggcttgcacctacctccccgacttaaaaatgtgaattcgttcttttttggtttttttag...

Basic information

species Physcomitrella patens
transcript PP1S112_186V6.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S112_186V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: LOC_Os01g23610.1 (Oryza sativa), 5'ss of exon 12
ACTGGGAGAGAAAGAGGGTTTCAAAGTTAGTGTTGCCAAGACTAGCTTCAAAGCCAACACTAAGGCTCTCGCTGAGAATGAAGGCGATGGGCTGGCTAAGgtaccggctggtgttacaacttttgg----cttgctctatattttggcttgcacctacctccccgacttaaaaatgtgaattcgttcttttttggtttttttag--------------------------------------------------------
|  ||  || || || || ||  |  | |||||||  ||||| |||||||| || ||||| |||||||| |||||||||||||| ||||| || ||||||||     ||  | || || ||| | |    || |  ||| | | |  |||  |   || |      |||  ||     | |    ||    |     |    ||                                                        
AAAGGCTGATAAGGAAGGATTTGAGATAAGTGTTGTTAAGACCAGCTTCAAGGCAAACACGAAGGCTCTGGCTGAGAATGAAGGAGATGGACTTGCTAAGgtgatt-ctacttttccaccttattgtattctagacctaaactgtttcttataatcacattggatccttgcaatgaatactgtagtcagactaatgctaaagaggaaatctatccttggaacttgaaaatgatgagacatgaactctacttttgctacag

upper sequence: PP1S112_186V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 12
ACTGGGAGAGAAAGAGGGTTTCAAAGTTAGTGTTGCCAAGACTAGCTTCAAAGCCAACACTAAGGCTCTCGCTGAGAATGAAGGCGATGGGCTGGCTAAGgtaccggctggtgttacaacttttggcttgct-------ctatattttggcttgcacctacctccccgacttaaaaatgtgaattcgttcttttttggtttttttag
    |  ||||||||||| |||||||| ||| | |||||||| || ||||| || ||||| ||||| || || || |||||||| || || || ||||||||   |    |    | || ||                  | ||| | |   || |   || | |     | | | || ||||  |  ||||  |  |         
GAAAGCTGAGAAAGAGGGATTCAAAGTAAGTATCGCCAAGACAAGTTTCAAGGCAAACACAAAGGCCCTAGCCGAAAATGAAGGAGAAGGACTCGCTAAGgtgaagagaagaaccaaaaattgaaataaaaaaagatagttgtatatagttctggagtgacttgcgaagataagatatctgaacactctcttcatgtgaacag----

upper sequence: PP1S112_186V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: AT3G16950.2 (Arabidopsis thaliana), 5'ss of exon 12
ACTGGGAGAGAAAGAGGGTTTCAAAGTTAGTGTTGCCAAGACTAGCTTCAAAGCCAACACTAAGGCTCTCGCTGAGAATGAAGGCGATGGGCTGGCTAAGgtaccggctggtgttacaacttttggcttgctctatattttggcttgcacctacctccccgacttaaaaatgtgaattcgttcttttttggtttttttag
|   || ||||| || || || ||||||||||||| |||||| || ||||| || ||||| ||||| || ||||| |||||||| || ||  | ||||||||   ||  |  |  | |  | |||  ||  | ||| | |     || |            || || | || | | | | ||   || ||          
AAAAGGCGAGAAGGAAGGATTTAAAGTTAGTGTTGTCAAGACAAGTTTCAAGGCTAACACAAAGGCCCTAGCTGAAAATGAAGGAGAAGGAATAGCTAAGgt---gggagaagcaaaagttgttgatttatt-tatgtctca---tgaaag---------aacatagagatctcattgcttttcattatgcag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208366234|gb|DC943808.1|DC943808
EST:     AAGCCAACACTAAGGCTCTCGCTGAGAATGAAGGCGATGGGCTGGCTAAG                         TTGATCTATCGACCTGACTCTGGCGAGATTCTGGGTGTTCACATTCTTGGC
genomic: AAGCCAACACTAAGGCTCTCGCTGAGAATGAAGGCGATGGGCTGGCTAAGgtaccggctg ... tttcaaccagTTGATCTATCGACCTGACTCTGGCGAGATTCTGGGTGTTCACATTCTTGGC