1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CAAGCGCTTGAAACAAAAGCTGGCTGAACAAAACAAGAAAGAAGCAAAGTTGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcctatgatacttcccttcgctgctttctgtggtagttagcccaaaatactattgttatgacatggccatgaagtgcgttgactaatttatttttttcgatcatgggcag
species | Physcomitrella patens |
transcript | PP1S109_70V6.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGTTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|67693573|gb|BJ953806.1|BJ953806
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|162221696|gb|FC397921.1|FC397921
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGTTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|162194798|gb|FC368954.1|FC368954
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGTTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|162200393|gb|FC376379.1|FC376379
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGTTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|162200392|gb|FC376378.1|FC376378
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGTTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|37838514|gb|BJ596522.1|BJ596522
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|15262182|gb|BI437492.1|BI437492
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|162167151|gb|FC343627.1|FC343627
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGTTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|162194797|gb|FC368953.1|FC368953
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGTTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|67694114|gb|BJ954347.1|BJ954347
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|162253927|gb|FC430600.1|FC430600
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGTTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|208399856|gb|DC925166.1|DC925166
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|162160212|gb|FC337109.1|FC337109
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGTTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|67725216|gb|BJ975475.1|BJ975475
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAATATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|208372778|gb|DC952665.1|DC952665
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|67696942|gb|BJ957175.1|BJ957175
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|162165284|gb|FC340798.1|FC340798
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGTTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|162172469|gb|FC349138.1|FC349138
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGTTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|162167152|gb|FC343628.1|FC343628
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGTTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|162221592|gb|FC397609.1|FC397609
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGTTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|162173904|gb|FC349704.1|FC349704
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGTTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|162193216|gb|FC371523.1|FC371523
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGTTGCAGCCGCGCCAGAGCCCATGGTTACTEST: gi|162199327|gb|FC373707.1|FC373707
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
EST: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAG AAAATGGAGCCAGCCAACGGCGTTGCAGCCGCGCCAGAGCCCATGGTTACT
genomic: TGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcc ... tcatgggcagAAAATGGAGCCAGCCAACGGCGCTGCAGCCGCGCCAGAGCCCATGGTTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGCGCTTGAAACAAAAGCTGGCTGAACAAAACAAGAAAGAAGCAAAGTTGTATGGCAACATGTTTGCTCGCCTCAGCAAGATGGAAGCAGCAGAGAAGgtgagcttcctatgatacttcccttcgctgctttctgtggtagttagcccaaaatactattgttatgacatggccatgaagtgcgttgactaatttatttttttcgatcatgggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG