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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGAAGATGTCAATCCTGTTGGGCATTGCTCAGATGAACCTGGGCATTCTATTGAGCTACTTCAATGCTAGATACTTTCGCAGTGCACTTGACGTTTGgtaaacctatttaaccaattttagaagcattcgtggtgtgcaagttgtgcttgtgcatttgtcatcaaaattttagttactatgtcatagatgtgccgat...

Basic information

species Physcomitrella patens
transcript PP1S107_75V6.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S107_75V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: EDP04117 (Chlamydomonas reinhardtii), 5'ss of exon 17
------------------AGATGAAGATGTCAATCCTGTTGGGCATTGCTCAGATGAACCTGGGCATTCTATTGAGCTACTTCAATGCTAGATACTTTCGCAGTGCACTTGACGTTTGgtaaacctatttaaccaattt-tagaagcattcgtggtgtgcaagttgtgcttgtgcatttgtcatcaaaattttagttactatgtcatagatgtgccgat
                  ||||||||||||| |||||| ||||  | ||||| ||||||||||||||  |  ||       ||||    |  |||||  |  | |  ||    |  |||         |       |   | |  |     | |||| |  ||| | |   | | | | | |  |    |    | |  |  ||               
CCTTCCTGAACTCGATGAAGATGAAGATGTCCATCCTGCTGGGTGTGGCTCACATGAACCTGGGCATCATCATGTCGCTGCTCAACAACAACTACTTCAGgtgcg-gctgtgtgcgtgggcgtgtgggtgggtgggtgggtgggtggggcgggggtgggtgagtggaggg-gcggactgggcggctgggt---ggatggtgggtg--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162262918|gb|FC438778.1|FC438778
EST:     CTATTGAGCTACTTCAATGCTAGATACTTTCGCAGTGCACTTGACGTTTG                         GTACCAGTTTATTCCACAGCTGTTGTTTCTCAATGCTCTCTTCGGCTATCT
genomic: CTATTGAGCTACTTCAATGCTAGATACTTTCGCAGTGCACTTGACGTTTGgtaaacctat ... ctgaattcagGTACCAGTTTATTCCACAGCTGTTGTTTCTCAATGCTCTCTTCGGCTATCT