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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGGGGGAACAACAGTGAGACTAGGTGGCATAGCGAAAGGATCTGGCATGATTCATCCAAACATGGCGACCATGCTCGGAgtacatccgacaacgacttaactctatgaatgtatacagtgttatcagcctgtttccaatacttctcatttactactctcgttttaatgttcactactatcactaatgctgtggctgtgagcag

Basic information

species Physcomitrella patens
transcript PP1S90_220V6.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S90_220V6.2 (Physcomitrella patens), 5'ss of exon 11
lower sequence: EFJ32643 (Selaginella moellendorffii), 5'ss of exon 9
ATAGGGGGAACAACAGTGAGACTAGGTGGCATAGCGAAAGGATCTGGCATGATTCATCCAAACATGGCGACCATGCTCGGAgtacatccgacaacgacttaactctatgaatgtatacagtgttatcagcctgtttccaatacttctcatttactactctcgttttaatgttcactactatcactaatgctgtggctgtgagcag
 | || ||||| || || |   | |||||||| |||||||||||||| ||||| ||||||||||||||||| |||||  | ||| ||||      || |       |||||| |  |   | ||  |||                                                                            
GTGGGAGGAACGACCGTTAAGATCGGTGGCATGGCGAAAGGATCTGGGATGATCCATCCAAACATGGCGACGATGCTTAGTgta-atccttatttgattatcaagaatgaatcttgagtttattcgcag----------------------------------------------------------------------------

upper sequence: PP1S90_220V6.2 (Physcomitrella patens), 5'ss of exon 11
lower sequence: EFJ20784 (Selaginella moellendorffii), 5'ss of exon 9
ATAGGGGGAACAACAGTGAGACTAGGTGGCATAGCGAAAGGATCTGGCATGATTCATCCAAACATGGCGACCATGCTCGGAgtacatccgacaacgacttaactct-atgaatgtatacagtgttatcagcctgtttccaatacttctcatttactactctcgttttaatgttcactactatcactaatgctgtggctgtgagcag
 | || ||||| || || |   | |||||||| |||||||||||||| ||||| ||||||||||||||||| |||||  | ||| ||||       | || | | | | |||||| | ||   |  | ||  | ||  ||                                                                  
GTGGGAGGAACGACCGTTAAGATCGGTGGCATGGCGAAAGGATCTGGGATGATCCATCCAAACATGGCGACGATGCTTAGTgta-atcc-----ttatttgattatcaagaatgtctccaa-atcttgagtttattcgcag-----------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162173818|gb|FC349410.1|FC349410
EST:     TAGCGAAAGGATCTGGCATGATTCATCCAAACATGGCGACCATGCTCGGA                         GTTGTGACTTGTGATGTAGATGTTACGGCGGAGGTATGGAGGCCAATGGTT
genomic: TAGCGAAAGGATCTGGCATGATTCATCCAAACATGGCGACCATGCTCGGAgtacatccga ... ctgtgagcagGTTGTGACTTGTGATGTAGATGTTACGGCGGAGGTATGGAGGCCAATGGTT
EST: gi|162169383|gb|FC345739.1|FC345739
EST:     TAGCGAAAGGATCTGGCATGATTCATCCAAACATGGCGACCATGCTCGGA                         GTTGTGACTTGTGATGTAGATGTTACGGCGGAGGTAT
genomic: TAGCGAAAGGATCTGGCATGATTCATCCAAACATGGCGACCATGCTCGGAgtacatccga ... ctgtgagcagGTTGTGACTTGTGATGTAGATGTTACGGCGGAGGTAT
EST: gi|208372841|gb|DC956242.1|DC956242
EST:     GCGAAAGGATCTGGCATGATTCATCCAAACCATGGGCGACCATGCTCGGA                         GTTGTGACTTGTGATGTAGATGTTACGGCGGAGGTATGGAGGCCAATGGTT
genomic: GCGAAAGGATCTGGCATGATTCATCCAAA-CAT-GGCGACCATGCTCGGAgtacatccga ... ctgtgagcagGTTGTGACTTGTGATGTAGATGTTACGGCGGAGGTATGGAGGCCAATGGTT
EST: gi|162152901|gb|FC329203.1|FC329203
EST:     TAGCGAAAGGATCTGGCATGATTCATCCAAACATGGCGACCATGCTCGGA                         GTTGTGACTTGTGATGTAGATGTTACGGCGGAGGTATGGAGGCCAATGGTT
genomic: TAGCGAAAGGATCTGGCATGATTCATCCAAACATGGCGACCATGCTCGGAgtacatccga ... ctgtgagcagGTTGTGACTTGTGATGTAGATGTTACGGCGGAGGTATGGAGGCCAATGGTT