1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CATTCAAGCTATCCTTCATTTGGGCTAGGCAATCAATTCGCTTTTAAGCTCAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCGgtggggcttgaaacacttaatctccaataatcggatttttttttaccttggtattggtattgcacttttggagtagcaccaaattagacagaaatttgagtaggcgatgaatcctcgaaattgtttagcacacacctttgtctagtgcacagtagttaatgctccagagtttcaagcatttttaatggtacttttgcag
species | Physcomitrella patens |
transcript | PP1S86_24V6.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCG GATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGCEST: gi|19788036|gb|BQ040704.1|BQ040704
genomic: CAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCGgtggggcttg ... acttttgcagGATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGC
EST: CAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCG GATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGCEST: gi|18339175|gb|BJ171202.1|BJ171202
genomic: CAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCGgtggggcttg ... acttttgcagGATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGC
EST: GGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCG GATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGCEST: gi|37822050|gb|BJ580116.1|BJ580116
genomic: GGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCGgtggggcttg ... acttttgcagGATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGC
EST: CAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCG GATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGCEST: gi|37840029|gb|BJ598037.1|BJ598037
genomic: CAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCGgtggggcttg ... acttttgcagGATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGC
EST: CAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCG GATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGCEST: gi|162164168|gb|FC339591.1|FC339591
genomic: CAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCGgtggggcttg ... acttttgcagGATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGC
EST: CAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCG GATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGCEST: gi|162164169|gb|FC339592.1|FC339592
genomic: CAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCGgtggggcttg ... acttttgcagGATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGC
EST: CAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCG GATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGCEST: gi|37844633|gb|BJ602641.1|BJ602641
genomic: CAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCGgtggggcttg ... acttttgcagGATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGC
EST: CAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCG GATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGCEST: gi|37828890|gb|BJ586902.1|BJ586902
genomic: CAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCGgtggggcttg ... acttttgcagGATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGC
EST: CAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCG GATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGCEST: gi|37825014|gb|BJ583080.1|BJ583080
genomic: CAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCGgtggggcttg ... acttttgcagGATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGC
EST: CAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCG GATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGCEST: gi|37829827|gb|BJ587839.1|BJ587839
genomic: CAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCGgtggggcttg ... acttttgcagGATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGC
EST: CAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCG GATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGC
genomic: CAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCGgtggggcttg ... acttttgcagGATCTGAGAGCTTGACTGAGCTTATGTCCATGATAGCCCAGCGTGTTGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTCAAGCTATCCTTCATTTGGGCTAGGCAATCAATTCGCTTTTAAGCTCAAGGTGACGGGTCGCGATGGAACGGAGCAAAACCATCGCTTCAACTGCGgtggggcttgaaacacttaatctccaataatcggatttttttttaccttggtattggtattgcacttttggagtagcaccaaattagacagaaatttgagtaggcgatgaatcctcgaaattgtttagcacacacctttgtctagtgcacagtagttaatgctccagagtttcaagcatttttaatggtacttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA