1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GACAAGTGCTTGCAAAACCGTCTGGTTCGATTGGTTTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGACAATCAACGgtatgaaagctgttggtttctgtgttgcaaatattttgcagtgacatatagagatggcgcaccatacgatgtaggactatgttattggtgtttattttcc...
species | Physcomitrella patens |
transcript | PP1S82_30V6.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATTGGTTTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGACAATCAACG TGCAAGACTTGTTCATAGAGGTTCAGGCGTTTTGCATCAACTTTTCACAGAEST: gi|37822015|gb|BJ580081.1|BJ580081
genomic: ATTGGTTTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGACAATCAACGgtatgaaagc ... ctggttgtagTGCAAGACTTGTTCATAGAGGTTCAGGCGTTTTGCATCAACTTTTCACAGA
EST: ATTGGTTTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGACAATCAACG TGCAAGACTTGTTCATAGAGGTTCAGGCGTTTTGCATCAACTTTTCACAGAEST: gi|162165273|gb|FC341931.1|FC341931
genomic: ATTGGTTTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGACAATCAACGgtatgaaagc ... ctggttgtagTGCAAGACTTGTTCATAGAGGTTCAGGCGTTTTGCATCAACTTTTCACAGA
EST: ATTGGTTTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGACAATCAACG TGCAAGACTTGTTCATAGAGGTTCAGGCGTTTTGCATNCA-CTTTTCACAGEST: gi|208360796|gb|DC946492.1|DC946492
genomic: ATTGGTTTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGACAATCAACGgtatgaaagc ... ctggttgtagTGCAAGACTTGTTCATAGAGGTTCAGGCGTTTTGCAT-CAACTTTTCACAG
EST: ATTGGTTTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGACAATCAACG TGCAAGACTTGTTCATAGAGGTTCAGGCGTTTTGCATCAACTTTTCACAGAEST: gi|162165272|gb|FC341930.1|FC341930
genomic: ATTGGTTTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGACAATCAACGgtatgaaagc ... ctggttgtagTGCAAGACTTGTTCATAGAGGTTCAGGCGTTTTGCATCAACTTTTCACAGA
EST: ATTGGTTTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGACAATCAACG TGCAAGACTTGTTCATAGAGGTTCAGGCGTTTTGCATCAACTTTTCACAGAEST: gi|162228505|gb|FC404129.1|FC404129
genomic: ATTGGTTTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGACAATCAACGgtatgaaagc ... ctggttgtagTGCAAGACTTGTTCATAGAGGTTCAGGCGTTTTGCATCAACTTTTCACAGA
EST: ATTGGTTTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGACAATCAACG TGCAAGACTTGTTCATAGAGGTTCAGGCGTTTTGCATCAACTTTTCACAGAEST: gi|37822839|gb|BJ580905.1|BJ580905
genomic: ATTGGTTTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGACAATCAACGgtatgaaagc ... ctggttgtagTGCAAGACTTGTTCATAGAGGTTCAGGCGTTTTGCATCAACTTTTCACAGA
EST: ATTGGTTTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGACAATCAACG TGCAAGACTTGTTCATAGAGGTTCAGGCGTTTTGCATCAACTTTTCACAGAEST: gi|18339762|gb|BJ171789.1|BJ171789
genomic: ATTGGTTTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGACAATCAACGgtatgaaagc ... ctggttgtagTGCAAGACTTGTTCATAGAGGTTCAGGCGTTTTGCATCAACTTTTCACAGA
EST: ATTGGTTTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGACAATCAACG TGCAAGACTTGTTCATAGAGGTTCAGGCGTTTTGCATCAACTTTTCACAGAEST: gi|162215781|gb|FC390846.1|FC390846
genomic: ATTGGTTTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGACAATCAACGgtatgaaagc ... ctggttgtagTGCAAGACTTGTTCATAGAGGTTCAGGCGTTTTGCATCAACTTTTCACAGA
EST: ATTGGTTTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGACAATCAACG TGCAAGACTTGTTCATAGAGGTTCAGGCGTTTTGCATCAACTTTTCACAGA
genomic: ATTGGTTTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGACAATCAACGgtatgaaagc ... ctggttgtagTGCAAGACTTGTTCATAGAGGTTCAGGCGTTTTGCATCAACTTTTCACAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAAGTGCTTGCAAAACCGTCTGGTTCGATTGGTTTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGACAATCAACGgtatgaaagctgttggtttctgtgttgcaaatattttgcagtgacatatagagatggcgcaccatacgatgtaggactatgttattggtgtttattttcc
- - - - - - - - - - - - - - - - - - - - - - - GCAAAG