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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACATTGCTTTGTATGCCACTCTTGCAAGTCGTGATGTGgtaattctgtctttctgataaattctcaaactactttaactccttcgtggaatgtacctcaatgggatgaaacaagtgcaatttataaagcaagtagtggcaaactcgcaagccttttttcatccatcaggattggagttcattaaaatttgtgaatgcag

Basic information

species Physcomitrella patens
transcript PP1S81_165V6.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S81_165V6.3 (Physcomitrella patens), 5'ss of exon 11
lower sequence: LOC_Os05g44922.2 (Oryza sativa), 5'ss of exon 10
GTTACATTGCTTTGTATGCCACTCTTGCAAGTCGTGATGTGgta-----attctgtctttctgataaattctcaaactactttaactccttcgtggaatgtacctcaatgggatgaa------acaagtgcaatttataaagcaagtagtggcaaactcgcaagccttttttc----atccatc-aggattggagttcattaaaatttgtgaatgcag----------
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GGTTCATTGCAATGTATGCTACTCTTGCAAGTCGAGATGTGgtaagcagatgcaaccattctgtctaattcctgta-tattttatcccccctcttca---tacagtagtgagattcctacttttctggtttaccccacaaatctacttctacctaagagtagttttttttttccgaggtctacctaagagttgtacttatttattttttggatctcaaatctccacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162199151|gb|FC374597.1|FC374597
EST:     GTTACATTGCTTTGTATGCCACTCTTGCAAGTCGTGATGTG                         GACTTATGCTTGAT
genomic: GTTACATTGCTTTGTATGCCACTCTTGCAAGTCGTGATGTGgtaattctgt ... gtgaatgcagGACTTATGCTTGAT