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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTGGAATTGCCAACTTCACTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattctgagccctgtatgtgcatctgtggttgtacagttggactgattactatgaatcacgcacggaatctgacacagtccacatattctgttcatcag

Basic information

species Physcomitrella patens
transcript PP1S7_156V6.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S7_156V6.2 (Physcomitrella patens), 5'ss of exon 11
lower sequence: LOC_Os12g37870.1 (Oryza sativa), 5'ss of exon 9
TGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTGGAATTGCCAACTTCACTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattctgagccctgtatgtgcatctgtggttgtacagttggactgattactat-gaatcacgcacggaatctgacacagtccacatattctgttcatcag---
|||||| ||    ||||| ||  || |||||||||| || || ||||||||||| || ||||||||||||| ||| || ||||| ||||| || || |||| ||  |||   |    |   ||   |||||       || |   |||  || | ||  ||     ||   |   |   |  |||    |      |      |   
TGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGTGGTATAGCGAACTTCACTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttc---gattggatcgttgttctgtccccaaccactcccacttgttgccattaaaatcttcatccatcttattattgtctggcttccaaatctggtggcag

upper sequence: PP1S7_156V6.2 (Physcomitrella patens), 5'ss of exon 11
lower sequence: GRMZM2G107082_T01 (Zea mays), 5'ss of exon 9
TGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTGGAATTGCCAACTTCACTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgta-----aaattctgagccctgtatgtgcatctgtggttgta--cagttggactgattactatgaatcacgcacggaatctgacacagtccacatattctgttcatcag
|||||| |||   ||||| ||  || |||||||||| || || ||||||||||| |||||| | ||||||||||| || || || || || ||||| ||||||      |   || |     | ||   ||   ||| |||    || |   |    ||    | | | |  |      | |   |  | ||||| | |    |  ||||
TGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTGGCATAGCTAACTTCACTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaagaccactcactttagaatcctcactggtgcttggcaccactcatatctgttcacctaattgattcttcacctgttttatcg-ccacacaattcactt-tcag

upper sequence: PP1S7_156V6.2 (Physcomitrella patens), 5'ss of exon 11
lower sequence: GLYMA03G38810.1 (Glycine max), 5'ss of exon 10
TGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTGGAATTGCCAACTTCACTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattctgagccctgtatgtgcatctgtggttgtacagttggactgattactatgaa---tcacgcacggaatctgaca-cagtccacatattctgttcatcag
 ||||| ||    ||||| ||  |  |||||||||| || || ||||||||||| |||||||| |||||||| || |||||||| ||  | |  || |||||    |   |     |||||     ||||    ||     ||  |||  ||| | ||||   | | |    |  |    || || || |||               
CGATGGCCGTAAGAGAGCCCTTCTTATTGGAGGTGGCATAGCAAACTTCACTGATGTTGCTGCCACATTCAACGGGATTATTCGAGCCCTGAAAGAGAAGgtgtgttatcgttagttgtat-----tctgaatctgc----ttcaacttgttaatttgaaagtttatgagttggtttcctcatcactctacag--------------

upper sequence: PP1S7_156V6.2 (Physcomitrella patens), 5'ss of exon 11
lower sequence: GLYMA19G41390.1 (Glycine max), 5'ss of exon 6
---TGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTGGAATTGCCAACTTCACTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattctgagccctgtatgtgcatctgtggttgtacagttggactgattact-atgaatcacgcacggaatc-tgacacagtccacatattctgttcatcag
    ||||| ||    ||||| ||  |  |||||||||| || || ||||||||||| |||||||| |||||||   | |||||||| ||  | |  ||   | |   ||  | ||   | |   |  |||||   |      |||    |||    | |||| |      |  ||||     ||||                     
TCCCGATGGCCGTAAGAGAGCCCTTCTTATTGGAGGTGGCATAGCAAACTTCACTGATGTTGCTGCCACATTCAGCAGGATTATTCGAGCCCTGAAAGAGgtg-tgttatcgttagttgtattctta-atctgct-tcaacttgttaatttgaaagtttatgagttgatttcctaatcactctacag---------------------

upper sequence: PP1S7_156V6.2 (Physcomitrella patens), 5'ss of exon 11
lower sequence: Vv14s0060g00550.t01 (Vitis vinifera), 5'ss of exon 10
TGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTGGAATTGCCAACTTCACTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaatt---ctgagcc-ctgtatgtgcatctgtggttgtacagttggactgattactatgaatcacgcacggaatctgacacagtccacatattctgttcatcag----
|||||| ||    ||||| ||  || ||||||| || ||||| ||||||||||| |||||||| || |||||||| ||| | || ||| | | ||| |||||   ||     |||     | | | || |||| |||||||     |   |    ||   | ||    ||    | | |       | |   | |||| ||  || |    
TGATGGCCGTAAGAGAGCCCTTCTCATTGGAGGGGGTATTGCTAACTTCACTGATGTTGCTGCCACTTTCAATGGGATTGTCCGGGCTCTGAAGGAGAAGgtgtgatcaagttgaattattctctctggatct-tggttgtttcaattctcatcctaaattcaagtttgcttcaactttttttt--ttctttttttctttttttctgacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208394814|gb|DC920157.1|DC920157
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|67699027|gb|BJ959260.1|BJ959260
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|162274022|gb|FC450369.1|FC450369
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|208374183|gb|DC945229.1|DC945229
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|208371001|gb|DC944376.1|DC944376
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|208362836|gb|DC950636.1|DC950636
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTNGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|162223607|gb|FC399419.1|FC399419
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|162270681|gb|FC446294.1|FC446294
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|208369217|gb|DC956050.1|DC956050
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|208367644|gb|DC955003.1|DC955003
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|13315390|gb|BG409045.1|BG409045
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATG-CCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|37846179|gb|BJ604187.1|BJ604187
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|162203672|gb|FC378547.1|FC378547
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|67701044|gb|BJ961277.1|BJ961277
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|208374459|gb|DC948435.1|DC948435
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|208366133|gb|DC955234.1|DC955234
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|162198094|gb|FC372121.1|FC372121
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTANAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|67724921|gb|BJ975180.1|BJ975180
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|208386150|gb|DC949061.1|DC949061
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATACGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|208364385|gb|DC950686.1|DC950686
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|208390780|gb|DC945853.1|DC945853
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|37851290|gb|BJ609298.1|BJ609298
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|208386182|gb|DC949093.1|DC949093
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|37845304|gb|BJ603312.1|BJ603312
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|208370928|gb|DC944303.1|DC944303
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|162184487|gb|FC359961.1|FC359961
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|208379626|gb|DC927123.1|DC927123
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|18341274|gb|BJ173308.1|BJ173308
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|67725040|gb|BJ975299.1|BJ975299
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|13315646|gb|BG409301.1|BG409301
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|208364465|gb|DC958034.1|DC958034
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|162198093|gb|FC372120.1|FC372120
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|208384409|gb|DC928160.1|DC928160
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|67720385|gb|BJ970644.1|BJ970644
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|208368243|gb|DC951509.1|DC951509
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|208354287|gb|DC957465.1|DC957465
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|208360305|gb|DC950250.1|DC950250
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|162169806|gb|FC346162.1|FC346162
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|67691916|gb|BJ952149.1|BJ952149
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
EST: gi|208379943|gb|DC927669.1|DC927669
EST:     CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAG                         GAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC
genomic: CTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 28 (downstream exon)
Score: 11

TGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTGGAATTGCCAACTTCACTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattct ... tgttcatcagGAATCGCAGCTTAAAGCAGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGCCCCAACTACCAAAAAGGGCTTGCCAAAATGAGGGAACTGGGAGCTGAGA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTGGAATTGCCAACTTCACTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgtaaaattctgagccctgtatgtgcatctgtggttgtacagttggactgattactatgaatcacgcacggaatctgacacagtccacatattctgttcatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT