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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGATCCAACGCTTGCTGTGGTTGCATACAAACGTGGCCTGTGTGACGATGAACTTGTCAATGTCACCAACAAGAATTCTCTCTTTAAGCTTCAGGCCAGgtaaacaagatcggattgtttatctgttggttttgacgagtcacatgttaatcatcttaatcgttcaactcgttacctgaataacttgtgtttctgctta...

Basic information

species Physcomitrella patens
transcript PP1S7_102V6.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S7_102V6.1 (Physcomitrella patens), 5'ss of exon 11
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 23
GCGATCCAACGCTTGCTGTGGTTGCATACAAACGTGGCCTGTGTGACGATGAACTTGTCAATGTCACCAACAAGAATTCTCTCTTTAAGCTTCAGGCCAGgtaaacaagatcggattgtttatctgttggttttgacgagtcacatgttaatcatcttaatcgttcaactcgttacctgaataacttgtgtttctgctta----
| ||||| || |||||||| ||||| |||| |||||| | |||||| ||||||||| | ||||||||||| || || || || || ||||| || || |||||  ||| || |  ||  || |   |   |||| |         |  | |   | | ||||  || | |  || | |  |||      | ||    ||     
GGGATCCTACCCTTGCTGTTGTTGCTTACAGACGTGGACAGTGTGATGATGAACTTATTAATGTCACCAATAAAAACTCACTGTTCAAGCTGCAAGCTAGgtatgcaa-attgtttttattcttcataccttttaattttatttcttctgaatctttaaatccatctattgattgcttacatagaaatcgatttgaattgccag

upper sequence: PP1S7_102V6.1 (Physcomitrella patens), 5'ss of exon 11
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 23
GCGATCCAACGCTTGCTGTGGTTGCATACAAACGTGGCCTGTGTGACGATGAACTTGTCAATGTCACCAACAAGAATTCTCTCTTTAAGCTTCAGGCCAGgtaaacaagatcggattgtttatctgttggttttgacgagtcacatgttaatcatcttaatcgttcaactcgttacctgaataacttgtgtttctgctta----
| ||||| || |||||||| ||||| |||| |||||| | |||||| ||||||||| | ||||||||||| || || || || || ||||| || || |||||  ||| || |  ||  || |   |   |||       |  | | | |||| | | ||||  || | |  || | |  |||      | ||    ||     
GGGATCCTACCCTTGCTGTTGTTGCTTACAGACGTGGACAGTGTGATGATGAACTTATTAATGTCACCAATAAAAACTCACTGTTCAAGCTGCAAGCTAGgtatgcaa-attgtttttattcttcatacttttaattttatttcttctgaatc-tttaaatccatcgattgattgcttacatagaaatcgatttgaattgccag

upper sequence: PP1S7_102V6.1 (Physcomitrella patens), 5'ss of exon 11
lower sequence: GRMZM2G325285_T01 (Zea mays), 5'ss of exon 12
GCGATCCAACGCTTGCTGTGGTTGCATACAAACGTGGCCTGTGTGACGATGAACTTGTCAATGTCACCAACAAGAATTCTCTCTTTAAGCTTCAGGCCAGgtaaacaagatcggattgtttatctgttggttttgacga--gtcacatgttaatcatcttaatcgttcaactcgttacctgaataacttgtgtttctgctta-------
  ||||| || |||||||| ||||| || | |||||| | |||||||||||||||| | || ||||| |||||||||||  | || ||||| || || |||||   || |     || | |   |||   || ||||    ||  || | |   ||  | ||| ||   ||   |||| ||   |  |||  ||| |    |       
--GATCCTACACTTGCTGTTGTTGCTTATAGACGTGGGCAGTGTGACGATGAACTTATTAACGTCACTAACAAGAATTCGTTATTCAAGCTGCAAGCTAGgtatgtaataat---ttttattgttgtgacttgtgacacctgtttcaagatgtccacatcaattgtctgacgacttacatgttcatattgcatttatttaaaatgacag

upper sequence: PP1S7_102V6.1 (Physcomitrella patens), 5'ss of exon 11
lower sequence: GRMZM2G111355_T01 (Zea mays), 5'ss of exon 3
GCGATCCAACGCTTGCTGTGGTTGCATACAAACGTGGCCTGTGTGACGATGAACTTGTCAATGTCACCAACAAGAATTCTCTCTTTAAGCTTCAGGCCAGgtaaacaagatcggattgtttatctgttggttttgacg--agtcacatgttaatcatcttaatcgttcaactcgttacctgaataacttgtgtttctgctta-------
| ||||| || |||||||| ||||| |||| |||||| | ||||||| |||||||| | || ||||| |||||||||||  | || ||||| || || |||||   || |     || | |   |||   || ||||    ||  || | |   ||  | ||| ||   ||   |||| ||   |  |||  ||| |    |       
GGGATCCTACACTTGCTGTTGTTGCTTACAGACGTGGGCAGTGTGACTATGAACTTATTAACGTCACTAACAAGAATTCGTTATTCAAGCTGCAAGCTAGgtatgtaataat---ttttattgttgtgacttgtgacacctgtttcaagatgtccacatcaattgtctgacgacttacatgttcatattgcatttatttaaaatgacag

upper sequence: PP1S7_102V6.1 (Physcomitrella patens), 5'ss of exon 11
lower sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 23
GCGATCCAACGCTTGCTGTGGTTGCATACAAACGTGGCCTGTGTGACGATGAACTTGTCAATGTCACCAACAAGAATTCTCTCTTTAAGCTTCAGGCCAGgtaaacaagatcggattgtttatctgttg-gttttgacgagtcacatgttaatcatcttaatcgttcaactcgttacctgaataacttgtgtttctgctta---
| ||||| ||  | || || || || ||    || || |  ||||||||||||||| |||||||||||||||| |||||| | || || || || || ||||        |    | | |  |||   | |     |    |  || | |||  |   || |    ||||   | |      | | |  |||| |  |||    
GTGATCCCACCTTAGCAGTTGTAGCTTATCGGCGAGGACAATGTGACGATGAACTTATCAATGTCACCAACAAAAATTCTTTGTTCAAACTGCAAGCAAGgtttgtggtgtatattggctcctctaaagtgagagtatactttgcaggataa--agtgtagtta--caaccattgattattgttattattgttacaacttcgaa

upper sequence: PP1S7_102V6.1 (Physcomitrella patens), 5'ss of exon 11
lower sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 23
GCGATCCAACGCTTGCTGTGGTTGCATACAAACGTGGCCTGTGTGACGATGAACTTGTCAATGTCACCAACAAGAATTCTCTCTTTAAGCTTCAGGCCAGgtaaacaagatcggattgtttatctgttggttttgacgagtcacatgttaatcatcttaatcgttcaactcgttacctgaataacttgtgtttctgctta-
| ||||| ||  | || || || || ||    || || |  ||||||||||||||| |||||||||||||||| |||||| | || || || || || ||||        |    | | || |||    ||      |  |    ||      |      | |||  |  | ||   |  | |||      ||    ||  
GGGATCCCACCTTAGCAGTTGTAGCTTATCGGCGAGGACAATGTGACGATGAACTTATCAATGTCACCAACAAAAATTCTTTGTTCAAACTGCAAGCAAGgtttgtggtgtatattggcttctctaa-agtgagagagtatactttgcaggataaaagtgtagttgcaaccattgattagaaaaccaacaattaaaattgt