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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTACCTACTGATGGGCCAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTGgtgagtcaatttaagaggttctgaagtttttcatttttagaaatgtgcatattttgattgtttgatggcatgacattgagaccctcttatgtttgttcaa...

Basic information

species Physcomitrella patens
transcript PP1S78_4V6.2
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67725353|gb|BJ975612.1|BJ975612
EST:     CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTG                         GCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
genomic: CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTGgtgagtcaat ... ctttgtgtagGCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
EST: gi|162277312|gb|FC453118.1|FC453118
EST:     CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTG                         GCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
genomic: CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTGgtgagtcaat ... ctttgtgtagGCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
EST: gi|6166916|gb|AW145180.1|AW145180
EST:     CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTG                         GCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
genomic: CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTGgtgagtcaat ... ctttgtgtagGCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
EST: gi|162268668|gb|FC445165.1|FC445165
EST:     CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTG                         GCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
genomic: CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTGgtgagtcaat ... ctttgtgtagGCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
EST: gi|18334696|gb|BJ166713.1|BJ166713
EST:     CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTG                         GCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
genomic: CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTGgtgagtcaat ... ctttgtgtagGCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
EST: gi|67695705|gb|BJ955938.1|BJ955938
EST:     CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTG                         GCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
genomic: CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTGgtgagtcaat ... ctttgtgtagGCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
EST: gi|208370489|gb|DC952192.1|DC952192
EST:     CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTG                         GCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
genomic: CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTGgtgagtcaat ... ctttgtgtagGCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
EST: gi|37852646|gb|BJ610654.1|BJ610654
EST:     CAATTGTGGCATCCTGCGGTACTGGTGTGACAGCTTGTATTTTAGCTCTG                         GCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
genomic: CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTGgtgagtcaat ... ctttgtgtagGCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
EST: gi|67726274|gb|BJ976533.1|BJ976533
EST:     CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTG                         GCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
genomic: CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTGgtgagtcaat ... ctttgtgtagGCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
EST: gi|162273260|gb|FC449241.1|FC449241
EST:     CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTG                         GCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
genomic: CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTGgtgagtcaat ... ctttgtgtagGCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
EST: gi|67508643|gb|BJ941504.1|BJ941504
EST:     CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTG                         GCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
genomic: CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTGgtgagtcaat ... ctttgtgtagGCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
EST: gi|67725181|gb|BJ975440.1|BJ975440
EST:     CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTG                         GCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
genomic: CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTGgtgagtcaat ... ctttgtgtagGCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
EST: gi|67692391|gb|BJ952624.1|BJ952624
EST:     CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTG                         GCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
genomic: CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTGgtgagtcaat ... ctttgtgtagGCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
EST: gi|67724933|gb|BJ975192.1|BJ975192
EST:     CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTG                         GCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
genomic: CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTGgtgagtcaat ... ctttgtgtagGCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
EST: gi|67695360|gb|BJ955593.1|BJ955593
EST:     CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTG                         GCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
genomic: CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTGgtgagtcaat ... ctttgtgtagGCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
EST: gi|18335656|gb|BJ167676.1|BJ167676
EST:     CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTG                         GCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
genomic: CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTGgtgagtcaat ... ctttgtgtagGCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
EST: gi|67572332|gb|BJ945156.1|BJ945156
EST:     CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTG                         GCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG
genomic: CAATTGTGGCATCCTGCGGCACTGGTGTGACAGCTTGTATTTTAGCTCTGgtgagtcaat ... ctttgtgtagGCTCTGCACCGGCTTGGCAAGCAAGACGTTGCAGTTTATGACGGTTCATGG