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TGTGCTTACAACAGATTCAAACCTCTGTGGCGGCACCTCTAGTTTCATGGTCTATCCTTCCTCCTGCAGATAACAGCAACATCTCCTCACAACAGCAATGgtaaatcttgtcttgtagaccatgacggatgcattgttgcaagttttttgggtttcaaattcaaagcaccattggaatccatttgaagtagataaacgtt...
species | Physcomitrella patens |
transcript | PP1S70_200V6.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TCTATCCTTCCTCCTGCAGATAACAGCAACATCTCCTCACAACAGCAATG GGTGACATGGGCTCTCACTATTTACCGTCAAACCATAGAGGCGGGTGTCTTEST: gi|162248061|gb|FC420066.1|FC420066
genomic: TCTATCCTTCCTCCTGCAGATAACAGCAACATCTCCTCACAACAGCAATGgtaaatcttg ... tatatgacagGGTGACATGGGCTCTCACTATTTACCGTCAAACCATAGAGGCGGGTGTCTT
EST: TCTATCCTTCCTCCTGCAGATAACAGCAACATCTCCTCACAACAGCAATG GGTGACATGGGCTCTCACTATTTACCGTCAAACCATAGAGGCGGGTGTCTTEST: gi|100388164|gb|BY988637.1|BY988637
genomic: TCTATCCTTCCTCCTGCAGATAACAGCAACATCTCCTCACAACAGCAATGgtaaatcttg ... tatatgacagGGTGACATGGGCTCTCACTATTTACCGTCAAACCATAGAGGCGGGTGTCTT
EST: TCTATCCTTCCTCCTGCAGATAACAGCAACATCTCCTCACAACAGCAATG GGTGACATGGGCTCTCACTEST: gi|100390833|gb|BY989316.1|BY989316
genomic: TCTATCCTTCCTCCTGCAGATAACAGCAACATCTCCTCACAACAGCAATGgtaaatcttg ... tatatgacagGGTGACATGGGCTCTCACT
EST: TCTATCCTTCCTCCTGCAGATAACAGCAACATCTCCTCACAACAGCAATG GGTGACATGGGCTCTCACTATTTACCGTCAAACCATAGAGGCGGGTGTCTT
genomic: TCTATCCTTCCTCCTGCAGATAACAGCAACATCTCCTCACAACAGCAATGgtaaatcttg ... tatatgacagGGTGACATGGGCTCTCACTATTTACCGTCAAACCATAGAGGCGGGTGTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGCTTACAACAGATTCAAACCTCTGTGGCGGCACCTCTAGTTTCATGGTCTATCCTTCCTCCTGCAGATAACAGCAACATCTCCTCACAACAGCAATGgtaaatcttgtcttgtagaccatgacggatgcattgttgcaagttttttgggtttcaaattcaaagcaccattggaatccatttgaagtagataaacgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC