1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTGCCGAAAGTCCTCTTATTGCAGCTGAAAGAGCAAGAGATGCCATTGACAGTGGGCGGGCGTTGAATGCCATGTTGAATTATATTGAAAGAAGCAGATCgtgagctgccgatcaatactctactccttgtattcttcctatgtggagagaaaatcatgcaaatagttgattagtgctcattgagaccttgataagcttggggtgaaaccttgagcacttctaccctccctaattgccccgtttacccctctgacaattttttgttgtggattcag
species | Physcomitrella patens |
transcript | PP1S70_198V6.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGTGGGCGGGCGTTGAATGCCATGTTGAATTATATTGAAAGAAGCAGATC GCTGCCCCGCAAACCATCACCATCAGCTTCTTAAGGATGTCTAAGTCCTGGEST: gi|37833404|gb|BJ591416.1|BJ591416
genomic: AGTGGGCGGGCGTTGAATGCCATGTTGAATTATATTGAAAGAAGCAGATCgtgagctgcc ... gtggattcagGCTGCCCCGCAAACCATCACCATCAGCTTCTTAAGGATGTCTAAGTCCTGG
EST: AGTGGGCGGGCGTTGAATGCCATGTTGAATTATATTGAAAGAAGCAGATC GCTGCCCCGCAAACCATCACCATCAGCTTCTTAAGGATGTCTAAGTCCTGGEST: gi|37833312|gb|BJ591324.1|BJ591324
genomic: AGTGGGCGGGCGTTGAATGCCATGTTGAATTATATTGAAAGAAGCAGATCgtgagctgcc ... gtggattcagGCTGCCCCGCAAACCATCACCATCAGCTTCTTAAGGATGTCTAAGTCCTGG
EST: AGTGGGCGGGCGTTGAATGCCATGTTGAATTATATTGAAAGAAGCAGATC GCTGCCCCGCAAACCATCACCATCAGCTTCTTAAGGATGTCTAAGTCCTGGEST: gi|37833413|gb|BJ591425.1|BJ591425
genomic: AGTGGGCGGGCGTTGAATGCCATGTTGAATTATATTGAAAGAAGCAGATCgtgagctgcc ... gtggattcagGCTGCCCCGCAAACCATCACCATCAGCTTCTTAAGGATGTCTAAGTCCTGG
EST: AGTGGGCGGGCGTTGAATGCCATGTTGAATTATATTGAAAGAAGCAGATC GCTGCCCCGCAAACCATCACCATCAGCTTCTTAAGGATGTCTAAGTCCTGGEST: gi|37833440|gb|BJ591452.1|BJ591452
genomic: AGTGGGCGGGCGTTGAATGCCATGTTGAATTATATTGAAAGAAGCAGATCgtgagctgcc ... gtggattcagGCTGCCCCGCAAACCATCACCATCAGCTTCTTAAGGATGTCTAAGTCCTGG
EST: AGTGGGCGGGCGTTGAATGCCATGTTGAATTATATTGAAAGAAGCAGATC GCTGCCCCGCAAACCATCACCATCAGCTTCTTAAGGATGTCTAAGTCCTGG
genomic: AGTGGGCGGGCGTTGAATGCCATGTTGAATTATATTGAAAGAAGCAGATCgtgagctgcc ... gtggattcagGCTGCCCCGCAAACCATCACCATCAGCTTCTTAAGGATGTCTAAGTCCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCCGAAAGTCCTCTTATTGCAGCTGAAAGAGCAAGAGATGCCATTGACAGTGGGCGGGCGTTGAATGCCATGTTGAATTATATTGAAAGAAGCAGATCgtgagctgccgatcaatactctactccttgtattcttcctatgtggagagaaaatcatgcaaatagttgattagtgctcattgagaccttgataagcttggggtgaaaccttgagcacttctaccctccctaattgccccgtttacccctctgacaattttttgttgtggattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT