1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CAGTGGGCGACGTCTGATGTGGCAAAACTCTTTGGGTCATTGTGTGCTGAAGGCCAACTTCCCAAAAGGAAAGAAGGAGCTGTCTGTTTCTCTTTTCCAGgtaaagtgaatcatttttttccaacgtcgactttagcttttcaggagcgcctactaaatgtttaattatgtctgttgcattgtttacgtatgatttgtttaagaggcctcatctgacgtcgtactttttattccccccgctctccctccacag
species | Physcomitrella patens |
transcript | PP1S70_181V6.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGGCCAACTTCCCAAAAGGAAAGAAGGAGCTGTCTGTTTCTCTTTTCCAG ACTCTAGTGCTGATGCTCTTCAACGATGCCCAGTCTTTGACTTTTCACGACEST: gi|162176873|gb|FC352848.1|FC352848
genomic: AGGCCAACTTCCCAAAAGGAAAGAAGGAGCTGTCTGTTTCTCTTTTCCAGgtaaagtgaa ... ccctccacagACTCTAGTGCTGATGCTCTTCAACGATGCCCAGTCTTTGACTTTTCACGAC
EST: AGGCCAACTTCCCAAAAGGAAAGAAGGAGCTGTCTGTTTCTCTTTTCCAG ACTCTAGTGCTGATGCTCTTCAACGATGCCCAGTCTTTGACTTTTCACGACEST: gi|162257954|gb|FC433840.1|FC433840
genomic: AGGCCAACTTCCCAAAAGGAAAGAAGGAGCTGTCTGTTTCTCTTTTCCAGgtaaagtgaa ... ccctccacagACTCTAGTGCTGATGCTCTTCAACGATGCCCAGTCTTTGACTTTTCACGAC
EST: AGGCCAACTTCCCAAAAGGAAAGAAGGAGCTGTCTGTTTCTCTTTTCCAG ACTCTAGTGCTGATGCTCTTCAACGATGCCCAGTCTTTGACTTTTCACGACEST: gi|162162041|gb|FC338832.1|FC338832
genomic: AGGCCAACTTCCCAAAAGGAAAGAAGGAGCTGTCTGTTTCTCTTTTCCAGgtaaagtgaa ... ccctccacagACTCTAGTGCTGATGCTCTTCAACGATGCCCAGTCTTTGACTTTTCACGAC
EST: AGGCCAACTTCCCAAAAGGAAAGAAGGAGCTGTCTGTTTCTCTTTTCCAG ACTCTAGTGCTGATGCTCTTCAACGATGCCCAGTCTTTGACTTTTCACGACEST: gi|162178399|gb|FC354123.1|FC354123
genomic: AGGCCAACTTCCCAAAAGGAAAGAAGGAGCTGTCTGTTTCTCTTTTCCAGgtaaagtgaa ... ccctccacagACTCTAGTGCTGATGCTCTTCAACGATGCCCAGTCTTTGACTTTTCACGAC
EST: AGGCCAACTTCCCAAAAGGAAAGAAGGAGCTGTCTGTTTCTCTTTTCCAG ACTCTAGTGCTGATGCTCTTCAACGATGCCCAGTCTTTGACTTTTCACGACEST: gi|162175711|gb|FC351298.1|FC351298
genomic: AGGCCAACTTCCCAAAAGGAAAGAAGGAGCTGTCTGTTTCTCTTTTCCAGgtaaagtgaa ... ccctccacagACTCTAGTGCTGATGCTCTTCAACGATGCCCAGTCTTTGACTTTTCACGAC
EST: AGGCCAACTTCCCAAAAGGAAAGAAGGAGCTGTCTGTTTCTCTTTTCCAG ACTCTAGTGCTGATGCTCTTCAACGATGCCCAGTCTTTGACTTTTCACGAC
genomic: AGGCCAACTTCCCAAAAGGAAAGAAGGAGCTGTCTGTTTCTCTTTTCCAGgtaaagtgaa ... ccctccacagACTCTAGTGCTGATGCTCTTCAACGATGCCCAGTCTTTGACTTTTCACGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGTGGGCGACGTCTGATGTGGCAAAACTCTTTGGGTCATTGTGTGCTGAAGGCCAACTTCCCAAAAGGAAAGAAGGAGCTGTCTGTTTCTCTTTTCCAGgtaaagtgaatcatttttttccaacgtcgactttagcttttcaggagcgcctactaaatgtttaattatgtctgttgcattgtttacgtatgatttgtttaagaggcctcatctgacgtcgtactttttattccccccgctctccctccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT