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ATGTCAAAATCAGCTCCTTCAGATCTCTCACGGATTAACCTTCTTGATACACCTGATgtaagtattagtgataattgccgcatactacgctctctttgttgtgttgatatgaattttgcaagtcgaactattgatatgttaatatatggatcaggag...
species | Physcomitrella patens |
transcript | PP1S5_195V6.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTCACGGATTAACCTTC-TGATACACCTGAT CAAATAGCGAATAAGATAAAGCGATGCAAGACAGACTCCGCCTTAGGEST: gi|162232153|gb|FC407729.1|FC407729
genomic: CTCACGGATTAACCTTCTTGATACACCTGATgtaagtatta ... ttcgcaacagCAAATAGCGAATAAGATAAAGCGATGCAAGACAGACTCCGCCTTAGG
EST: AATCAGCTCCTTCAGATCTCTCACGGATTAACCTTCTTGATACACCTGAT CAAATAGCGAATAAGATAAAGCGATGCAAGACAGACTCCGCCTTAGGEST: gi|37824470|gb|BJ582536.1|BJ582536
genomic: AATCAGCTCCTTCAGATCTCTCACGGATTAACCTTCTTGATACACCTGATgtaagtatta ... ttcgcaacagCAAATAGCGAATAAGATAAAGCGATGCAAGACAGACTCCGCCTTAGG
EST: AATCAGCTCCTTCAGATCTCTCACGGATTAACNTTCTTGATACACCTGAT CAAATAGCGAATAAGATAAAGCGATGCAAGACAGACTCCGCCTTAGGEST: gi|67571511|gb|BJ944335.1|BJ944335
genomic: AATCAGCTCCTTCAGATCTCTCACGGATTAACCTTCTTGATACACCTGATgtaagtatta ... ttcgcaacagCAAATAGCGAATAAGATAAAGCGATGCAAGACAGACTCCGCCTTAGG
EST: AATCAGCTCCTTCAGATCTCTCACGGATTAACCTTCTTGATACACCTGAT CAAATAGCGAATAAGATAAAGCGATGCAAGACAGACTCCGCCTTAGGEST: gi|162232167|gb|FC407730.1|FC407730
genomic: AATCAGCTCCTTCAGATCTCTCACGGATTAACCTTCTTGATACACCTGATgtaagtatta ... ttcgcaacagCAAATAGCGAATAAGATAAAGCGATGCAAGACAGACTCCGCCTTAGG
EST: ATCAGCTCCTTCAGATCTCTCACGGATTAACCTTTCT-GATACACCTGAT CAAATAGCGAATEST: gi|208358963|gb|DC950140.1|DC950140
genomic: ATCAGCTCCTTCAGATCTCTCACGGATTAACCTT-CTTGATACACCTGATgtaagtatta ... ttcgcaacagCAAATAGCGAAT
EST: CTCACGGATTAACCTTCTTGATACACCTGAT CAAATAGCGAATAAGATAAAGCGATGCAAGACAGACTCCGCCTTAGGEST: gi|162159330|gb|FC335144.1|FC335144
genomic: CTCACGGATTAACCTTCTTGATACACCTGATgtaagtatta ... ttcgcaacagCAAATAGCGAATAAGATAAAGCGATGCAAGACAGACTCCGCCTTAGG
EST: AATCAGCTCCTTCAGATCTCTCACGGATTAACCTTCTTGATACACCTGAT CAAATAGCGAATAAGATAAAGCGATGCAAGACAGACTCCGCCTTAGG
genomic: AATCAGCTCCTTCAGATCTCTCACGGATTAACCTTCTTGATACACCTGATgtaagtatta ... ttcgcaacagCAAATAGCGAATAAGATAAAGCGATGCAAGACAGACTCCGCCTTAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTCAAAATCAGCTCCTTCAGATCTCTCACGGATTAACCTTCTTGATACACCTGATgtaagtattagtgataattgccgcatactacgctctctttgttgtgttgatatgaattttgcaagtcgaactattgatatgttaatatatggatcaggag
- - - - TCAGCT
- - - - - CAGCTC