1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TCTTAAGGACGCGAAATTAGTCCCCGGTGGAGGAGCCTCAGAAATGGCTGTTTCTTCTATATTGAAGAAAAAGAGCATGTCAATTGAAGGTGTCGAGCAGgttcgtaaatctagttttgtgtgcaaatcctgcctttgtgttgcatatattatcactacgatctgagcggtagcattatttatggtcgatgttgcacagtagaaacatctcattggattttaatgtatgtagggtcttaaaaccttgtgattctgaacgtgttgtggttgattgcag
species | Physcomitrella patens |
transcript | PP1S56_219V6.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AAAAGAGCATGTCAATTGAAGGTGTCGAGCAG TGGCCTTACAGGGCAGTGGTACAAGCTCTTGAAGTTATTCCTCGAACTCTAEST: gi|37845010|gb|BJ603018.1|BJ603018
genomic: AAAAGAGCATGTCAATTGAAGGTGTCGAGCAGgttcgtaaat ... ttgattgcagTGGCCTTACAGGGCAGTGGTACAAGCTCTTGAAGTTATTCCTCGAACTCTA
EST: ATTGAAGAAAAAGAGCATGTCAATTGAAGGTGTCGAGCAG TGGCCTTACAGGGCAGTGGTACAAGCTCTTGAAGTTATTCCTCGAACTCTAEST: gi|162185858|gb|FC360958.1|FC360958
genomic: ATTGAAGAAAAAGAGCATGTCAATTGAAGGTGTCGAGCAGgttcgtaaat ... ttgattgcagTGGCCTTACAGGGCAGTGGTACAAGCTCTTGAAGTTATTCCTCGAACTCTA
EST: TTTCTTCTATATTGAAGAAAAAGAGCATGTCAATTGAAGGTGTCGAGCAG TGGCCTTACAGGGCAGTGGTACAAGCTCTTGAAGTTATTCCTCGAACTCTAEST: gi|162198578|gb|FC373411.1|FC373411
genomic: TTTCTTCTATATTGAAGAAAAAGAGCATGTCAATTGAAGGTGTCGAGCAGgttcgtaaat ... ttgattgcagTGGCCTTACAGGGCAGTGGTACAAGCTCTTGAAGTTATTCCTCGAACTCTA
EST: TTTCTTCTATATTGAAGAAAAAGAGCATGTCAATTGAAGGTGTCGAGCAG TGGCCTTACAGGGCAGTGGTACAAGCTCTTGAAGTTATTCCTCGAACTCTAEST: gi|208361680|gb|DC954128.1|DC954128
genomic: TTTCTTCTATATTGAAGAAAAAGAGCATGTCAATTGAAGGTGTCGAGCAGgttcgtaaat ... ttgattgcagTGGCCTTACAGGGCAGTGGTACAAGCTCTTGAAGTTATTCCTCGAACTCTA
EST: TTTCTTCTATATTGAAGAAAAAGAGCATGTCAATTGAAGGTGTCGAGCAG TGGCCTTACAGGGCAGTGGTACAAGCTCTTGAAGTTATTCCTCGAACTCTA
genomic: TTTCTTCTATATTGAAGAAAAAGAGCATGTCAATTGAAGGTGTCGAGCAGgttcgtaaat ... ttgattgcagTGGCCTTACAGGGCAGTGGTACAAGCTCTTGAAGTTATTCCTCGAACTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTAAGGACGCGAAATTAGTCCCCGGTGGAGGAGCCTCAGAAATGGCTGTTTCTTCTATATTGAAGAAAAAGAGCATGTCAATTGAAGGTGTCGAGCAGgttcgtaaatctagttttgtgtgcaaatcctgcctttgtgttgcatatattatcactacgatctgagcggtagcattatttatggtcgatgttgcacagtagaaacatctcattggattttaatgtatgtagggtcttaaaaccttgtgattctgaacgtgttgtggttgattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG