1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAGCACACTTATTACCAGCAACGTTGGGGCTATCGTGGAAGAGAGCACTAAGCTCACTCATGATTTGTACGACTCCTTCAAAGAAGAGGCGAAGTCCCAGgtgagctattgcgcttgatgatctgaagctagttttactaatgtctaaacattttcattgttatacttatctaaaacaacgctcttcatggtgcacattgttcaatgactgttagttttgttctagcactcaaagctttctttgttttacag
species | Physcomitrella patens |
transcript | PP1S53_92V6.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGCTCACTCATGATTTGTACGACTCCTTCAAAGAAGAGGCGAAGTCCCAG GGTTGGATGATGGGAGAAACTCTGCTTAGTCCCGGAGATTCAAGACTTTGTEST: gi|7648047|gb|AW739030.1|AW739030
genomic: AGCTCACTCATGATTTGTACGACTCCTTCAAAGAAGAGGCGAAGTCCCAGgtgagctatt ... tgttttacagGGTTGGATGATGGGAGAAACTCTGCTTAGTCCCGGAGATTCAAGACTTTGT
EST: AGCTCACTCATGATTTGTACGACTCCTTCAAAGAAGAGGCGAAGTCCCAG GGTTGGATGATGGGAGAAACTCTGCTTAGTCCCGGAGATTCAAGACTTTGTEST: gi|162241338|gb|FC416969.1|FC416969
genomic: AGCTCACTCATGATTTGTACGACTCCTTCAAAGAAGAGGCGAAGTCCCAGgtgagctatt ... tgttttacagGGTTGGATGATGGGAGAAACTCTGCTTAGTCCCGGAGATTCAAGACTTTGT
EST: AGCTCACTCATGATTTGTACGACTCCTTCAAAGAAGAGGCGAAGTCCCAG GGTTGGATGATGGGAGAAACTCTGCTTAGTCCCGGAGATTCAAGACTTTGTEST: gi|162159654|gb|FC336040.1|FC336040
genomic: AGCTCACTCATGATTTGTACGACTCCTTCAAAGAAGAGGCGAAGTCCCAGgtgagctatt ... tgttttacagGGTTGGATGATGGGAGAAACTCTGCTTAGTCCCGGAGATTCAAGACTTTGT
EST: AGCTCACTCATGATTTGTACGACTCCTTCAAAGAAGAGGCGAAGTCCCAG GGTTGGATGATGGGAGAAACTCTGCTTAGTCCCGGAGATTCAAGACTTTGTEST: gi|37827926|gb|BJ585938.1|BJ585938
genomic: AGCTCACTCATGATTTGTACGACTCCTTCAAAGAAGAGGCGAAGTCCCAGgtgagctatt ... tgttttacagGGTTGGATGATGGGAGAAACTCTGCTTAGTCCCGGAGATTCAAGACTTTGT
EST: AGCTCACTCATGATTTGTACGACTCCTTCAAAGAAGAGGCGAAGTCCCAG GGTTGGATGATGGGAGAAACTCTGCTTAGTCCCGGAGATTCAAGACTTTGTEST: gi|162271772|gb|FC448905.1|FC448905
genomic: AGCTCACTCATGATTTGTACGACTCCTTCAAAGAAGAGGCGAAGTCCCAGgtgagctatt ... tgttttacagGGTTGGATGATGGGAGAAACTCTGCTTAGTCCCGGAGATTCAAGACTTTGT
EST: AGCTCACTCATGATTTGTACGACTCCTTCAAAGAAGAGGCGAAGTCCCAG GGTTGGATGATGGGAGAAACTCTGCTTAGTCCCGGAGATTCAAGACTTTGT
genomic: AGCTCACTCATGATTTGTACGACTCCTTCAAAGAAGAGGCGAAGTCCCAGgtgagctatt ... tgttttacagGGTTGGATGATGGGAGAAACTCTGCTTAGTCCCGGAGATTCAAGACTTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCACACTTATTACCAGCAACGTTGGGGCTATCGTGGAAGAGAGCACTAAGCTCACTCATGATTTGTACGACTCCTTCAAAGAAGAGGCGAAGTCCCAGgtgagctattgcgcttgatgatctgaagctagttttactaatgtctaaacattttcattgttatacttatctaaaacaacgctcttcatggtgcacattgttcaatgactgttagttttgttctagcactcaaagctttctttgttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG