1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TGGACCTCGATGCGGGCTGCATGAGTTGATTTTACCGGAGAATGAACCTGGCAGCAGTATCATGCCGgtacagtccgattttttcttcttcttcttttgtttttatttgtttattcttccatttcttcttttcctgcaagaactgatgagagtttggggatactgcag
species | Physcomitrella patens |
transcript | PP1S49_154V6.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGAATGAACCTGGCAGCAGTATCATGCCG GGTAAGGTCAATCCCACACAGTGCGAGGCTTTAACAATGGTTTGCGCTCAGEST: gi|162199788|gb|FC375861.1|FC375861
genomic: AGAATGAACCTGGCAGCAGTATCATGCCGgtacagtccg ... gatactgcagGGTAAGGTCAATCCCACACAGTGCGAGGCTTTAACAATGGTTTGCGCTCAG
EST: TGCATGAGTTGATTTTACCGGAGAATGAACCTGGCAGCAGTATCATGCCG GGTAAGGTCAATCCCACACAGTGCGAGGCTTTAACAATGGTTTGCGCTCAGEST: gi|67724429|gb|BJ974688.1|BJ974688
genomic: TGCATGAGTTGATTTTACCGGAGAATGAACCTGGCAGCAGTATCATGCCGgtacagtccg ... gatactgcagGGTAAGGTCAATCCCACACAGTGCGAGGCTTTAACAATGGTTTGCGCTCAG
EST: GAGAATGAACCTGGCAGCAGTATCATGCCG GGTAAGGTCAATCCCACACAGTGCGAGGCTTTAACAATGGTTTGCGCTCAGEST: gi|162169177|gb|FC345144.1|FC345144
genomic: GAGAATGAACCTGGCAGCAGTATCATGCCGgtacagtccg ... gatactgcagGGTAAGGTCAATCCCACACAGTGCGAGGCTTTAACAATGGTTTGCGCTCAG
EST: TGCATGAGTTGATTTTACCGGAGAATGAACCTGGCAGCAGTATCATGCCG GGTAAGGTCAATCCCACACAGTGCGAGGCTTTAACAATGGTTTGCGCTCAGEST: gi|208369492|gb|DC955905.1|DC955905
genomic: TGCATGAGTTGATTTTACCGGAGAATGAACCTGGCAGCAGTATCATGCCGgtacagtccg ... gatactgcagGGTAAGGTCAATCCCACACAGTGCGAGGCTTTAACAATGGTTTGCGCTCAG
EST: TGCATGAGTTGA-TTTACCGGAGAATGAACCTGGCAGCAGTATCATGCCG GGTAAGGTCAATCCCACACAGTGCGAGGCTTTAACAATGGTTTGCGCTCAGEST: gi|18335537|gb|BJ167557.1|BJ167557
genomic: TGCATGAGTTGATTTTACCGGAGAATGAACCTGGCAGCAGTATCATGCCGgtacagtccg ... gatactgcagGGTAAGGTCAATCCCACACAGTGCGAGGCTTTAACAATGGTTTGCGCTCAG
EST: CAGCAGTATCATGCCG GGTAAGGTCAATCCCACACAGTGCGAGGCTTTAACAATGGTTTGCGCTCAGEST: gi|162170412|gb|FC347610.1|FC347610
genomic: CAGCAGTATCATGCCGgtacagtccg ... gatactgcagGGTAAGGTCAATCCCACACAGTGCGAGGCTTTAACAATGGTTTGCGCTCAG
EST: TGCATGAGTTGATTTTACCGGAGAATGAACCTGGCAGCAGTATCATGCCG GGTAAGGTCAATCCCACACAGTGCGAGGCTTTAACAATGGTTTGCGCTCAGEST: gi|162193053|gb|FC371477.1|FC371477
genomic: TGCATGAGTTGATTTTACCGGAGAATGAACCTGGCAGCAGTATCATGCCGgtacagtccg ... gatactgcagGGTAAGGTCAATCCCACACAGTGCGAGGCTTTAACAATGGTTTGCGCTCAG
EST: TGCATGAGTTGATTTTACCGGAGAATGAACCTGGCAGCAGTATCATGCCG GGTAAGGTCAATCCCACACAGTGCGAGGCTTTAACAATGGTTTGCGCTCAGEST: gi|208373600|gb|DC952425.1|DC952425
genomic: TGCATGAGTTGATTTTACCGGAGAATGAACCTGGCAGCAGTATCATGCCGgtacagtccg ... gatactgcagGGTAAGGTCAATCCCACACAGTGCGAGGCTTTAACAATGGTTTGCGCTCAG
EST: GCAGCAGTNTCATGCC- GGTAA-GTC-ATTCCACACAGTGCGAGGC-TTAACAATGG-TTGCGCTCAGEST: gi|162199787|gb|FC375860.1|FC375860
genomic: GCAGCAGTATCATGCCGgtacagtccg ... gatactgcagGGTAAGGTCAATCCCACACAGTGCGAGGCTTTAACAATGGTTTGCGCTCAG
EST: AGAATGAACCTGGCAGCAGTATCATGCCG GGTAAGGTCAATCCCACACAGTGCGAGGCTTTAACAATGGTTTGCGCTCAG
genomic: AGAATGAACCTGGCAGCAGTATCATGCCGgtacagtccg ... gatactgcagGGTAAGGTCAATCCCACACAGTGCGAGGCTTTAACAATGGTTTGCGCTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGACCTCGATGCGGGCTGCATGAGTTGATTTTACCGGAGAATGAACCTGGCAGCAGTATCATGCCGgtacagtccgattttttcttcttcttcttttgtttttatttgtttattcttccatttcttcttttcctgcaagaactgatgagagtttggggatactgcag
- - - - - - - - - - - - - - - - - - GGAGAA