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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATCAAGAAGGTACCTGAAGACATCAAAGAATTGAAACCAACATTGTTTGTTGGTGTTCCTCGTGTCTTCGACAGGCTAACTACAGgtaagctcggactgctcatgaaaataacttctgtgacgaaatacgttaattttgtaccgaattgtcatcttctcgagatatggtgaagtaccagattttg...

Basic information

species Physcomitrella patens
transcript PP1S47_161V6.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100365584|gb|BY966669.1|BY966669
EST:     ACCAACATTGTTTGTTGGTGTTCCTCGTGTCTTCGACAGGCTAACTACAG                         GAATTCAAGAAAAAATTGCTGCTTCAGGTAGAAT-AAAAATTGGCTCTTCC
genomic: ACCAACATTGTTTGTTGGTGTTCCTCGTGTCTTCGACAGGCTAACTACAGgtaagctcgg ... gtttttgcagGAATTCAAGAAAAAATTGCTGCTTCAGGTAGAATAAAAAATTGGCTCTTCC
EST: gi|162167248|gb|FC342813.1|FC342813
EST:     CCAACATTGTTTGTTGGTGTTCCTCGTGTCTTCGACAGGCTAACTACAG                         GAATTCAAGAAAAAATTGCTGCTTCAGGTAGAATAAAAAATTGGCTCTTCC
genomic: CCAACATTGTTTGTTGGTGTTCCTCGTGTCTTCGACAGGCTAACTACAGgtaagctcgg ... gtttttgcagGAATTCAAGAAAAAATTGCTGCTTCAGGTAGAATAAAAAATTGGCTCTTCC