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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATATGTCATTGGCTAGCACTATCAGTCTTTACGTGGCACTCCTTGCTTTCGTTTTAAGTGTGCACAGTGACCATCTTGAATACGTCGATCAAGTTTTGgtatgtttatcgtaatctttctacattcaatttctattgttccaattcggttttggatgttttcgtcttagaaaggggaatagatagagtgacgtattgt...

Basic information

species Physcomitrella patens
transcript PP1S456_14V6.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162193241|gb|FC369455.1|FC369455
EST:     TCGTTTTAAGTGTGCACAGTGACCATCTTGAATACGTCGATCAAGTTTTG                         GGATTATGTGCTAAGAGATTGGAGGGAAAGGGACGTATAAAAGATGCCAAG
genomic: TCGTTTTAAGTGTGCACAGTGACCATCTTGAATACGTCGATCAAGTTTTGgtatgtttat ... catcttgcagGGATTATGTGCTAAGAGATTGGAGGGAAAGGGACGTATAAAAGATGCCAAG
EST: gi|162212425|gb|FC388673.1|FC388673
EST:     TCGTTTTAAGTGTGCACAGTGACCATCTTGAATACGTCGATCAAGTTTTG                         GGATTATGTGCTAAGAGATTGGAGGGAAAGGGACGTATAAAAGATGCCAAG
genomic: TCGTTTTAAGTGTGCACAGTGACCATCTTGAATACGTCGATCAAGTTTTGgtatgtttat ... catcttgcagGGATTATGTGCTAAGAGATTGGAGGGAAAGGGACGTATAAAAGATGCCAAG
EST: gi|18358024|gb|BJ190083.1|BJ190083
EST:     TCGTTTTAAGTGTGCACAGTGACCATCTTGAATACGTCGATCAAGTTTTG                         GGATTATGTGCTAAGAGATTGGAGGGAAAGGGACGTATAAAAGATGCCAAG
genomic: TCGTTTTAAGTGTGCACAGTGACCATCTTGAATACGTCGATCAAGTTTTGgtatgtttat ... catcttgcagGGATTATGTGCTAAGAGATTGGAGGGAAAGGGACGTATAAAAGATGCCAAG