1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
TACTCCAACTCCAATGCAGTTGTTTACGTCGGCTGTGGAGAGCGTGGAAATGAAATGGCTGAGgtttcgtaatgtgaccataacttccttgctcgtaatcaaattgttcatctttgcggatgtttacgaatctgactcagggattcttcctattgcagtggggtatctcatgaactcaaagtttgcttctccaaatttatgtaaccaatttgtttggcttgtggtgtgtag
species | Physcomitrella patens |
transcript | PP1S44_102V6.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GTTGTTTACGTCGGCTGTGGAGAGCGTGGAAATGAAATGGCTGAG GTGCTGATGGATTTTCCACAACTGACGATGACCTTACCCGACGGTCGGGAGEST: gi|22492681|gb|BU052604.1|BU052604
genomic: GTTGTTTACGTCGGCTGTGGAGAGCGTGGAAATGAAATGGCTGAGgtttcgtaat ... tggtgtgtagGTGCTGATGGATTTTCCACAACTGACGATGACCTTACCCGACGGTCGGGAG
EST: GTTGTTTACGTCGGCTGTGGAGAGCGTGGAAATGAAATGGCTGAG GTGCTGATGGATTTTCCACAACTGACGATGACCTTACCCGACGGTCGGGAGEST: gi|22492244|gb|BU052167.1|BU052167
genomic: GTTGTTTACGTCGGCTGTGGAGAGCGTGGAAATGAAATGGCTGAGgtttcgtaat ... tggtgtgtagGTGCTGATGGATTTTCCACAACTGACGATGACCTTACCCGACGGTCGGGAG
EST: GTTGTTTACGTCGGCTGTGGAGAGCGTGGAAATGAAATGGCTGAG GTGCTGATGGATTTTCCACAACTGACGATGACCTTACCCGACGGTCGGGAGEST: gi|162179503|gb|FC356543.1|FC356543
genomic: GTTGTTTACGTCGGCTGTGGAGAGCGTGGAAATGAAATGGCTGAGgtttcgtaat ... tggtgtgtagGTGCTGATGGATTTTCCACAACTGACGATGACCTTACCCGACGGTCGGGAG
EST: ATGCAGTTGTTTACGTCGGCTGTGGAGAGCGTGGAAATGAAATGGCTGAG GTGCTGATGGATTTTCCACAACTGACGATGACCTTACCCGAC
genomic: ATGCAGTTGTTTACGTCGGCTGTGGAGAGCGTGGAAATGAAATGGCTGAGgtttcgtaat ... tggtgtgtagGTGCTGATGGATTTTCCACAACTGACGATGACCTTACCCGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTCCAACTCCAATGCAGTTGTTTACGTCGGCTGTGGAGAGCGTGGAAATGAAATGGCTGAGgtttcgtaatgtgaccataacttccttgctcgtaatcaaattgttcatctttgcggatgtttacgaatctgactcagggattcttcctattgcagtggggtatctcatgaactcaaagtttgcttctccaaatttatgtaaccaatttgtttggcttgtggtgtgtag
- - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - TGGAGA