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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAAAACAATCAAAATCAGGGAAGCCACTTTCTATGGGCTTTGGATTTATCGAGTTTGATAGTGTGGACACTGCAAAAATGGTCTGCCAGAATCTACAGgtaccaagcgggccatatctgagcagggctcgcctatactcttatatttcaggctattgtgtttgtacaagaatgtacgtcactaaggaatggttcaattgaaccacaagatttttaatgttgaatatatattcttggtgcatgcag

Basic information

species Physcomitrella patens
transcript PP1S42_20V6.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162154933|gb|FC331975.1|FC331975
EST:     TCGAGTTTGATAGTGTGGACACTGCAAAAATGGTCTGCCAGAATCTACAG                         GGTACTGTACTAGAAGGCCACGCTTTGATTCTACAACTAAGCCATAATTCT
genomic: TCGAGTTTGATAGTGTGGACACTGCAAAAATGGTCTGCCAGAATCTACAGgtaccaagcg ... gtgcatgcagGGTACTGTACTAGAAGGCCACGCTTTGATTCTACAACTAAGCCATAATTCT
EST: gi|37823014|gb|BJ581080.1|BJ581080
EST:     TGGTCTGCCAGAATCTACAG                         GGTACTGTACTAGAAGGCCACGCTTTGATTCTACAACTAAGCCATAATTCT
genomic: TGGTCTGCCAGAATCTACAGgtaccaagcg ... gtgcatgcagGGTACTGTACTAGAAGGCCACGCTTTGATTCTACAACTAAGCCATAATTCT
EST: gi|162168052|gb|FC344366.1|FC344366
EST:     TCGAGTTTGATAGTGTGGACACTGCAAAAATGGTCTGCCAGAATCTACAG                         GGTACTGTACTAGAAGGCCACGCTTTGATTCTACAACTAAGCCATAATTCT
genomic: TCGAGTTTGATAGTGTGGACACTGCAAAAATGGTCTGCCAGAATCTACAGgtaccaagcg ... gtgcatgcagGGTACTGTACTAGAAGGCCACGCTTTGATTCTACAACTAAGCCATAATTCT