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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCAAATAAGAGGAGCTAATCGCGACGAGAAAAAAATAAAAATGGCTCAACGATTTCCTAACTCTAGCCATTATCTCACCTACCGTCACTCATTGCGTgtacgtcatatctcctctccatctcacatcaacttctctgtgtactttacctcactgtttttaatgtatgatcatcaattttactgagtacaatttcacataatgtttatgagttacgtgtttatctttgttcaaaatggcagctcagttctcagatgtacacgattgcttgttggtgtgacag

Basic information

species Physcomitrella patens
transcript PP1S427_2V6.2
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162158727|gb|FC335575.1|FC335575
EST:     AACGATTTCCTAACTCTAGCCATTATCTCACCTACCGTCACTCATTGCGT                         AGTTATGTTTCCATTCTGTACTTGAGGATGCCACCTGGCTTCAAGATCATT
genomic: AACGATTTCCTAACTCTAGCCATTATCTCACCTACCGTCACTCATTGCGTgtacgtcata ... ggtgtgacagAGTTATGTTTCCATTCTGTACTTGAGGATGCCACCTGGCTTCAAGATCATT
EST: gi|162183629|gb|FC359883.1|FC359883
EST:     AACGATTTCCTAACTCTAGCCATTATCTCACCTACCGTCACTCATTGCGT                         AGTTATGTTTCCATTCTGTACTTGAGGATGCCACCTGGCTTCAAGATCATT
genomic: AACGATTTCCTAACTCTAGCCATTATCTCACCTACCGTCACTCATTGCGTgtacgtcata ... ggtgtgacagAGTTATGTTTCCATTCTGTACTTGAGGATGCCACCTGGCTTCAAGATCATT
EST: gi|162199021|gb|FC372372.1|FC372372
EST:     AACGATTTCCTAACTCTAGCCATTATCTCACCTACCGTCACTCATTGCGT                         AGTTATGTTTCCATTCTGTACTTGAGGATGCCACCTGGCTTCAAGATCATT
genomic: AACGATTTCCTAACTCTAGCCATTATCTCACCTACCGTCACTCATTGCGTgtacgtcata ... ggtgtgacagAGTTATGTTTCCATTCTGTACTTGAGGATGCCACCTGGCTTCAAGATCATT