1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAGATTCATTAAGAGTACCTGCAGCAGGAGTTGCTGCTCGCTTGCGCAGTAAAGGTCGGGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATGgtaagcttttgtagttgccccacaagccatcataataaatctagtaaaactgcaaaacagcgcctagtggtgtttcattaaaccagatctacgcatatgt...
species | Physcomitrella patens |
transcript | PP1S38_401V6.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AAAGGTCGGGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATG GGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGGEST: gi|162152312|gb|FC328499.1|FC328499
genomic: AAAGGTCGGGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATGgtaagctttt ... tgcctttcagGGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGG
EST: AAAGGTCGGGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATG GGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGGEST: gi|15327069|gb|BI487546.1|BI487546
genomic: AAAGGTCGGGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATGgtaagctttt ... tgcctttcagGGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGG
EST: GGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATG GGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGGEST: gi|162190166|gb|FC365908.1|FC365908
genomic: GGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATGgtaagctttt ... tgcctttcagGGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGG
EST: AAAGGTCGGGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATG GGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGGEST: gi|162229134|gb|FC404493.1|FC404493
genomic: AAAGGTCGGGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATGgtaagctttt ... tgcctttcagGGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGG
EST: AAAGGTCGGGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATG GGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGGEST: gi|162181949|gb|FC357756.1|FC357756
genomic: AAAGGTCGGGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATGgtaagctttt ... tgcctttcagGGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGG
EST: AAAGGTCGGGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATG GGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGGEST: gi|162250564|gb|FC428467.1|FC428467
genomic: AAAGGTCGGGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATGgtaagctttt ... tgcctttcagGGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGG
EST: AAAGGTCGGGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATG GGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGGEST: gi|162226288|gb|FC402996.1|FC402996
genomic: AAAGGTCGGGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATGgtaagctttt ... tgcctttcagGGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGG
EST: AAAGGTCGGGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATG GGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGGEST: gi|162188468|gb|FC365066.1|FC365066
genomic: AAAGGTCGGGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATGgtaagctttt ... tgcctttcagGGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGG
EST: AAAGGTCGGGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATG GGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGGEST: gi|162240525|gb|FC419341.1|FC419341
genomic: AAAGGTCGGGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATGgtaagctttt ... tgcctttcagGGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGG
EST: AAGAAAATGAAATG GGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGGEST: gi|162240526|gb|FC419342.1|FC419342
genomic: AAGAAAATGAAATGgtaagctttt ... tgcctttcagGGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGG
EST: AAGAAAATGAAATG GGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGGEST: gi|162258146|gb|FC433928.1|FC433928
genomic: AAGAAAATGAAATGgtaagctttt ... tgcctttcagGGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGG
EST: AAAGGTCGGGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATG GGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGGEST: gi|162190165|gb|FC365907.1|FC365907
genomic: AAAGGTCGGGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATGgtaagctttt ... tgcctttcagGGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGG
EST: AAAGGTCGAGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATG GGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGG
genomic: AAAGGTCGGGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATGgtaagctttt ... tgcctttcagGGTGTTTAAACATTGTGACACGCTGAAAGCTAAGCGTTTGGTGCTTCTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGATTCATTAAGAGTACCTGCAGCAGGAGTTGCTGCTCGCTTGCGCAGTAAAGGTCGGGTTGTTGAACTTGTCATTGAGAAGGGCAAGAAAATGAAATGgtaagcttttgtagttgccccacaagccatcataataaatctagtaaaactgcaaaacagcgcctagtggtgtttcattaaaccagatctacgcatatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA