1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCAGGCTGGAATTCCAGATTCTTCTGCGTCTGCTATGCAATCCCATGCGTATGGGCAGCAGATGCCAATACAGGGCCAAGTGTCCCAGCAACAACCTCTGgtaagtacatgggacgagtgttgacaaagtaggccattcctatacgtgtcattttggatatgcataaataagttactcacaggaataggctcttgaaggc...
species | Physcomitrella patens |
transcript | PP1S36_103V6.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATGGGCAGCAGATGCCAATACAGGGCCAAGTGTCCCAGCAACAACCTCTG -A--TGACTGGAGAATTAGAGCAGCAGAAGGCGTTGTTGCAGCAAGTCCTGEST: gi|162173451|gb|FC349830.1|FC349830
genomic: ATGGGCAGCAGATGCCAATACAGGGCCAAGTGTCCCAGCAACAACCTCTGgtaagtacat ... tttcttgtagCAGATGACTGGAGAATTAGAGCAGCAGAAGGCGTTGTTGCAGCAAGTCCTG
EST: ATGGGCAGCAGATGCCAATACAGGGCCAAGTGTCCCAGCAACAACCTCTG CAGATGACTGGAGAATTAGAGCAGCAGAAGGCGTTGTTGCAGCAAGTCCTGEST: gi|162230502|gb|FC407417.1|FC407417
genomic: ATGGGCAGCAGATGCCAATACAGGGCCAAGTGTCCCAGCAACAACCTCTGgtaagtacat ... tttcttgtagCAGATGACTGGAGAATTAGAGCAGCAGAAGGCGTTGTTGCAGCAAGTCCTG
EST: ATGGGCAGCAGATGCCAATACAGGGCCAAGTGTCCCAGCAACAACCTTTG -A--TGACTGGAGAATTAGAGCAGCAGAAGGCGTTGTTGCAGCAAGTCCTGEST: gi|162181677|gb|FC358707.1|FC358707
genomic: ATGGGCAGCAGATGCCAATACAGGGCCAAGTGTCCCAGCAACAACCTCTGgtaagtacat ... tttcttgtagCAGATGACTGGAGAATTAGAGCAGCAGAAGGCGTTGTTGCAGCAAGTCCTG
EST: ATGGGCAGCAGATGCCAATACAGGGCCAAGTGTCCCAGCAACAACCTCTG CAGATGACTGGAGAATTAGAGCAGCAGAAGGCGTTGTTGCAGCAAGTCCTGEST: gi|208388298|gb|DC949298.1|DC949298
genomic: ATGGGCAGCAGATGCCAATACAGGGCCAAGTGTCCCAGCAACAACCTCTGgtaagtacat ... tttcttgtagCAGATGACTGGAGAATTAGAGCAGCAGAAGGCGTTGTTGCAGCAAGTCCTG
EST: ATGGGCAGCAGATGCCAATACAGGGCCAAGTGTCCCAGCAACAACCTCTG CAGATGACTGGAGAATTAGAGCAGCAGAAGGCGTTGTTGCAGCAAGTCCTGEST: gi|208381166|gb|DC923731.1|DC923731
genomic: ATGGGCAGCAGATGCCAATACAGGGCCAAGTGTCCCAGCAACAACCTCTGgtaagtacat ... tttcttgtagCAGATGACTGGAGAATTAGAGCAGCAGAAGGCGTTGTTGCAGCAAGTCCTG
EST: ATGGGCAGCAGATGCCAATACAGGGCCAAGTGTCCCAGCAACAACCTCTG CAGATGACTGGAGAATTAGAGCAGCAGAAGGCGTTGTTGCAGCAAGTCCTG
genomic: ATGGGCAGCAGATGCCAATACAGGGCCAAGTGTCCCAGCAACAACCTCTGgtaagtacat ... tttcttgtagCAGATGACTGGAGAATTAGAGCAGCAGAAGGCGTTGTTGCAGCAAGTCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGGCTGGAATTCCAGATTCTTCTGCGTCTGCTATGCAATCCCATGCGTATGGGCAGCAGATGCCAATACAGGGCCAAGTGTCCCAGCAACAACCTCTGgtaagtacatgggacgagtgttgacaaagtaggccattcctatacgtgtcattttggatatgcataaataagttactcacaggaataggctcttgaaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG