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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCGGGATCTCTACTATGTCGGAAGTCCGCTGCAAACGCGTTTGCTCAGCACAAACGAGCCACTACTACGACCAACATCATTGAGTATCTTGGTCACAGgttgtttacctttatgctgaggttctactgaaggtttctgatgccatgccttaagaatattcgaagctcttcgtgcgtctctgaatcatacaatttcttatgtcctgattttctgtagtttattccgtacatatgtaatcattttgggagaataataccttgcttaagtgaggttgtttttcatgtggtattaacag

Basic information

species Physcomitrella patens
transcript PP1S35_49V6.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208366516|gb|DC954838.1|DC954838
EST:     CACAAACGAGCCACTACTACGACCAACATCATTGAGTATCTTGGTCACAG                         CATGGACGAACTTTTTCCTCTTCCTCAATAACTTCCTTCTTGCGGCTGGAA
genomic: CACAAACGAGCCACTACTACGACCAACATCATTGAGTATCTTGGTCACAGgttgtttacc ... gtattaacagCATGGACGAACTTTTTCCTCTTCCTCAATAACTTCCTTCTTGCGGCTGGAA
EST: gi|67697637|gb|BJ957870.1|BJ957870
EST:     CACAAACGAGCCACTACTACGACCAACATCATTGAGTATCTTGGTCACAG                         CATGGACGAACTTTTTCCTCTTCCTCAATAACTTCCTTCTTGCGGCTGGAA
genomic: CACAAACGAGCCACTACTACGACCAACATCATTGAGTATCTTGGTCACAGgttgtttacc ... gtattaacagCATGGACGAACTTTTTCCTCTTCCTCAATAACTTCCTTCTTGCGGCTGGAA
EST: gi|162264668|gb|FC441666.1|FC441666
EST:     CACAAACGAGCCACTACTACGACCAACATCATTGAGTATCTTGGTCACAG                         CATGGACGAACTTTTTCCTCTTCCTCAATAACTTCCTTCTTGCGGCTGGAA
genomic: CACAAACGAGCCACTACTACGACCAACATCATTGAGTATCTTGGTCACAGgttgtttacc ... gtattaacagCATGGACGAACTTTTTCCTCTTCCTCAATAACTTCCTTCTTGCGGCTGGAA
EST: gi|67578895|gb|BJ951062.1|BJ951062
EST:     CACAAACGAGCCACTACTACGACCAACATCATTGAGTATCTTGGTCACAG                         CATGGACGAACTTTTTCCTCTTCCTCAATAACTTCCTTCTTGCGGCTGGAA
genomic: CACAAACGAGCCACTACTACGACCAACATCATTGAGTATCTTGGTCACAGgttgtttacc ... gtattaacagCATGGACGAACTTTTTCCTCTTCCTCAATAACTTCCTTCTTGCGGCTGGAA