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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGAAGCGGTGTAAATTATCTGGGAATTTTTTCAATATTCTCTTCAACCTGAACAAGTTCGTAGCATTTGAGACTCGTGACCCTTTTCTCATTCGTCAGgtattacattactcatatcgaaaacctggatttcaattcttagttggtcataaagcgagtgtccagttcattattcacaattatgaactaaatcttattt...

Basic information

species Physcomitrella patens
transcript PP1S34_411V6.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S34_411V6.1 (Physcomitrella patens), 5'ss of exon 11
lower sequence: LOC_Os02g09840.1 (Oryza sativa), 5'ss of exon 10
CCTGAAGCGGTGTAAATTATCTGGGAATTTTTTCAATATTCTCTTCAACCTGAACAAGTTCGTAGCATTTGAGACTCGTGACCCTTTTCTCATTCGTCAGgtattacattactcatatcgaaaacctggatttcaattcttagttggtcataaagcgagtgtccagttcattattcacaattatgaactaaatcttattt---------
| |     |||| ||| | |||||| |||| ||||| |||||||||||||||||||| ||  | || |||||  || | || || || ||||| || || |||   || |   |  |   | |  |||   |  |||||  |     | |  |    | ||||  | | || | |    || ||  | ||  || |  |          
CTTCCGAAGGTGCAAACTGTCTGGGCATTTCTTCAACATTCTCTTCAACCTGAACAAATTTATGGCCTTTGAAGCTAGAGATCCCTTCCTCATCCGCCAAgtaagtcaattgcc-cactcatattctga--taaaattcaaacaatattagcagatta-tgtcatgctgataagtgtttatgatatattatttcctgatgcaactgcag

upper sequence: PP1S34_411V6.1 (Physcomitrella patens), 5'ss of exon 11
lower sequence: GRMZM2G104254_T01 (Zea mays), 5'ss of exon 7
CCTGAAGCGGTGTAAATTATCTGGGAATTTTTTCAATATTCTCTTCAACCTGAACAAGTTCGTAGCATTTGAGACTCGTGACCCTTTTCTCATTCGTCAGgt-attacattactc---atatcgaaaacctggatttcaattcttagttggtcataaagcgagtgtccagttcattattcacaattatgaactaaatcttattt
| | || ||||||||| | || || ||| | ||||||||||| ||||| |||||||||||| | |||||||| |||||||| || || |||||||| ||||| |||| |   ||    ||||   |||  ||      | |  | ||||    |    |  | |||  | ||  |                             
CTTAAAACGGTGTAAACTCTCAGGAAATATATTCAATATTCTTTTCAATCTGAACAAGTTCATGGCATTTGAAACTCGTGATCCATTCCTCATTCGCCAGgtgattataacccttaatatatttcaaatttgctgccaagtattaagttaaataatccgataatgtttaatt-gtag---------------------------

upper sequence: PP1S34_411V6.1 (Physcomitrella patens), 5'ss of exon 11
lower sequence: GRMZM2G148323_T01 (Zea mays), 5'ss of exon 11
CCTGAAGCGGTGTAAATTATCTGGGAATTTTTTCAATATTCTCTTCAACCTGAACAAGTTCGTAGCATTTGAGACTCGTGACCCTTTTCTCATTCGTCAGgt-attacattactcatatcgaaaacctggatttcaattcttagttggtcataaagcgagtgtccagttcattattcacaattatgaactaaatcttattt
| | || ||||||||| | || || ||  | ||||||||||| ||||| || ||||||||| | |||||||| |||||||| || || |||||||| ||||| |||| | | || |      |||| |    ||   | |  |||      | ||   | || | | |   ||| |   |                     
CTTAAAACGGTGTAAACTCTCAGGAAACATATTCAATATTCTTTTCAATCTCAACAAGTTCATGGCATTTGAAACTCGTGATCCATTCCTCATTCGCCAGgtgattataatcctta----ataaactttagatttgctgccaagtattaagttaaataattggctaatgt-ttaattgtag--------------------

upper sequence: PP1S34_411V6.1 (Physcomitrella patens), 5'ss of exon 11
lower sequence: GLYMA10G32500.1 (Glycine max), 5'ss of exon 11
CCTGAAGCGGTGTAAATTATCTGGGAATTTTTTCAATATTCTCTTCAACCTGAACAAGTTCGTAGCATTTGAGACTCGTGACCCTTTTCTCATTCGTCAGgtattacattactcatatcgaaaacctggatttcaattcttagttggtcataaagcgagtgtccagttcattattcacaattatgaactaaatcttattt--
  | ||  |  | ||| | ||||| ||| ||||||||||||| ||||| || ||||||||  | || || ||||||||||| || |||||||| |||||||||  | | ||   | || || | |||  || ||| |    | |  | | ||       |  | |||||  |  | ||||  | |      || || |||  
TGTTAAAGGCAGCAAACTTTCTGGAAATGTTTTCAATATTCTTTTCAATCTCAACAAGTTTATTGCTTTCGAGACTCGTGATCCATTTCTCATACGTCAGgta--aaaata---agattgagatcct--atatcactaacaattaaggcttagtaatcttagcaagttc--tgattacaacaagggt----attttgtttag

upper sequence: PP1S34_411V6.1 (Physcomitrella patens), 5'ss of exon 11
lower sequence: GLYMA03G41180.1 (Glycine max), 5'ss of exon 11
CCTGAAGCGGTGTAAATTATCTGGGAATTTTTTCAATATTCTCTTCAACCTGAACAAGTTCGTAGCATTTGAGACTCGTGACCCTTTTCTCATTCGTCAGgtattacattactcatatcgaaaacctggatttcaattcttagttggtcataaagcgagtgtc-cagttcattattcacaattatgaactaaatcttattt------
||||||  |  ||||| | || || | | |||||||||| || ||||| ||||| |||||| | || ||||| ||||||||||| ||| | |||||||||||     | || |   ||  ||    |  |||    |  | |||  || || |   || | |    | | | | || ||     ||   ||  |||| | |      
CCTGAAAGGTGGTAAACTCTCAGGAAGTGTTTTCAATATCCTGTTCAATCTGAATAAGTTCATGGCCTTTGAAACTCGTGACCCATTTTTGATTCGTCAGgtgcatgaatatttg-ataaaagtgtt--attgtgctgttgagtcagt-atgat-tgactattgttggtaagttttgactgccttggtatatgtcttgtgtgaacag

upper sequence: PP1S34_411V6.1 (Physcomitrella patens), 5'ss of exon 11
lower sequence: GLYMA20G35090.1 (Glycine max), 5'ss of exon 11
CCTGAAGCGGTGTAAATTATCTGGGAATTTTTTCAATATTCTCTTCAACCTGAACAAGTTCGTAGCATTTGAGACTCGTGACCCTTTTCTCATTCGTCAGgtattacattactcatatcgaaaacctggatttc-aattcttagttggtcataaagcgagtgtccagttcattattcacaattatgaactaaatcttattt--
  | ||  |  ||||| | ||||| ||| ||||||||||||| ||||| || ||||||||  |  | || ||||||||||| || |||||||| |||||||||  | | ||   | ||  | | |||  ||  | ||   |||     |  ||| |  |||    | |||  |  | ||||  | |      || || |||  
TGTTAAAGGCAGTAAACTTTCTGGAAATGTTTTCAATATTCTTTTCAATCTCAACAAGTTTATTACTTTCGAGACTCGTGATCCATTTCTCATACGTCAGgta--aaaata---agattaagatcctatatcactaacaattaaggcttagtaatgttagta---aattc--tgattacaacaagggt----attttgtttag

upper sequence: PP1S34_411V6.1 (Physcomitrella patens), 5'ss of exon 11
lower sequence: AT5G44090.1 (Arabidopsis thaliana), 5'ss of exon 11
CCTGAAGCGGTGTAAATTATCTGGGAATTTTTTCAATATTCTCTTCAACCTGAACAAGTTCGTAGCATTTGAGACTCGTGACCCTTTTCTCATTCGTCAGgtattacattactcatatcgaaaacctggatttcaattcttagttggtcataaagcgag-tgtccagttcattattcacaattatgaactaa-atcttattt
 |||||    |  ||| | ||||| ||| |||||||||| ||||| ||||||||||| ||| | || ||||| || |||||||||||||||||||||||||||  ||||   |  | |  | |   |   |  |  |  ||| |   || |      || |||  |     ||| |    | |||  | |||   | ||   
TCTGAAAGCATCCAAACTTTCTGGAAATATTTTCAATATACTCTTTAACCTGAACAAATTCATGGCGTTTGAAACCCGTGACCCTTTTCTCATTCGTCAGgtaa-acataggttttctatagagttttcctccctttggttattcaatccttcgtttagctgttgaaactgttactactgaatatttattaatgccataaa-

upper sequence: PP1S34_411V6.1 (Physcomitrella patens), 5'ss of exon 11
lower sequence: AT1G03960.2 (Arabidopsis thaliana), 5'ss of exon 11
CCTGAAGCGGTGTAAATTATCTGGGAATTTTTTCAATATTCTCTTCAACCTGAACAAGTTCGTAGCATTTGAGACTCGTGACCCTTTTCTCATTCGTCAGgta---ttacattactcatatcgaaaacctggatttcaattcttagttgg-tcataaagcgagtg--tccagttcattattcacaat--tatgaactaaatcttattt----------------------------------------
 |||||  | |  ||| | || |  ||  |||||||||| ||||||||||| || |||||| | |||||||| || |||||||| ||||||||||| ||||||   ||   ||||   |   |      | |   ||||     |      | | ||||    ||  | |  || | |  | |      | || | ||  ||  |||                                         
TCTGAAAGGATCGAAACTTTCAGCAAACGTTTTCAATATACTCTTCAACCTTAATAAGTTCATGGCATTTGAAACACGTGACCCATTTCTCATTCGCCAGgtaagtttggcttaccagtggagtttttatagcactcaagagggaaaaaaataacaaagaatatgacttcttttaactgctaaaggcagtttgtagtagttcggattgaggcaattagaacaagtataattctctttcattgctgtag

upper sequence: PP1S34_411V6.1 (Physcomitrella patens), 5'ss of exon 11
lower sequence: Vv14s0036g00750.t01 (Vitis vinifera), 5'ss of exon 8
CCTGAAGCGGTGTAAATTATCTGGGAATTTTTTCAATATTCTCTTCAACCTGAACAAGTTCGTAGCATTTGAGACTCGTGACCCTTTTCTCATTCGTCAGgt--attacattactcatatcgaaaacctggatttcaattcttagttggtcat--aaagcgagtgtccagttcattattcacaattatgaactaaatcttattt
| ||||  | |||||| | ||||| | | | |||||||| || |||||||| || |||||  | || ||||| |||||||| || |||||||||||||||||  || | ||   | |           | | ||| |  | ||  ||  ||||  | | | | |  |   | | ||  | | | | |  |              
CTTGAAAGGTTGTAAACTTTCTGGAAGTGTCTTCAATATCCTTTTCAACCTTAATAAGTTTATGGCTTTTGAAACTCGTGATCCATTTCTCATTCGTCAGgtaaatcaaatagtttactcttg----ttagtttttatgtattgtttcatcatgcataacaactccctgatgcttttatgata-tgaccag-------------