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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACAATGTGGATGGAGGCGATGACTTGGATTTGATTGTCACAACCATGAATGGTAATGTTTATTGTTTCCAGACACCTGCTCCACATCACCCTCTCAAGgtacctaaaattttatatacaattcatttattgttttgagaattttcaattagagttgcaggttaaagtatatctggtagcagctatatctacattcttg...

Basic information

species Physcomitrella patens
transcript PP1S334_25V6.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162184192|gb|FC359653.1|FC359653
EST:     ATGGTAATGTTTATTGTTTCCAGACACCTGCTCCACATCACCCTCTCAAG                         GCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAAT
genomic: ATGGTAATGTTTATTGTTTCCAGACACCTGCTCCACATCACCCTCTCAAGgtacctaaaa ... ttgtgcctagGCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAAT
EST: gi|162216337|gb|FC392130.1|FC392130
EST:     ATGGTAATGTTTATTGTTTCCAGACACCTGCTCCACATCACCCTCTCAAG                         GCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAAT
genomic: ATGGTAATGTTTATTGTTTCCAGACACCTGCTCCACATCACCCTCTCAAGgtacctaaaa ... ttgtgcctagGCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAAT
EST: gi|208365360|gb|DC954801.1|DC954801
EST:     ATGGTAATGTTTATTGTTTCCAGACACCTGCTCCACATCACCCTCTCAAG                         GCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAAT
genomic: ATGGTAATGTTTATTGTTTCCAGACACCTGCTCCACATCACCCTCTCAAGgtacctaaaa ... ttgtgcctagGCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAAT
EST: gi|162216336|gb|FC392129.1|FC392129
EST:     ACATCACCCTCTCAAG                         GCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAAT
genomic: ACATCACCCTCTCAAGgtacctaaaa ... ttgtgcctagGCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAAT
EST: gi|162174410|gb|FC350481.1|FC350481
EST:     ATGGTAATGTTTATTGTTTCCAGACACCTGCTCCACATCACCCTCTCAAG                         GCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAAT
genomic: ATGGTAATGTTTATTGTTTCCAGACACCTGCTCCACATCACCCTCTCAAGgtacctaaaa ... ttgtgcctagGCATGGCCGTCGCAACTACAAGGGAGGAATGTAGTGGCAAGCAAGATTAAT