1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTAGTCAATTCGACAAAATACGGCTGCAGTATTTTGGTGTCTTCTGTAGCCAAACCGACTGAAGCAAAATTTTCTCTCCGAGATCCATCTGAGgtttgtaactcttgaagccctacaatacattcaggacccgtacctcattaagacaacaaattccaccttatgcagaatagatggaatggtcactaatattgtggtgttccgtcattacag
species | Physcomitrella patens |
transcript | PP1S32_182V6.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTGTAGCCAAACCGACTGAAGCAAAATTTTCTCTCCGAGATCCATCTGAG GTCATGGGGTTTTTATGCAAGCTTGTGCACTGGGAAAAGTGCAGACAGGATEST: gi|162151040|gb|FC326857.1|FC326857
genomic: CTGTAGCCAAACCGACTGAAGCAAAATTTTCTCTCCGAGATCCATCTGAGgtttgtaact ... gtcattacagGTCATGGGGTTTTTATGCAAGCTTGTGCACTGGGAAAAGTGCAGACAGGAT
EST: CTGTAGCCAAACCGACTGAAGCAAAATTTTCTCTCCGAGATCCATCTGAG GTCATGGGGTTTTTATGCAAGCTTGTGCACTGGGAAAAGTGCAGACAGGATEST: gi|162187422|gb|FC362644.1|FC362644
genomic: CTGTAGCCAAACCGACTGAAGCAAAATTTTCTCTCCGAGATCCATCTGAGgtttgtaact ... gtcattacagGTCATGGGGTTTTTATGCAAGCTTGTGCACTGGGAAAAGTGCAGACAGGAT
EST: CTGTAGCCAAACCGACTGAAGCAAAATTTTCTCTCCGAGATCCATCTGAG GTCATGGGGTTTTTATGCAAGCTTGTGCACTGGGAAAAGTGCAGACAGGATEST: gi|162156021|gb|FC332188.1|FC332188
genomic: CTGTAGCCAAACCGACTGAAGCAAAATTTTCTCTCCGAGATCCATCTGAGgtttgtaact ... gtcattacagGTCATGGGGTTTTTATGCAAGCTTGTGCACTGGGAAAAGTGCAGACAGGAT
EST: CTGTAGCCAAACCGACTGAAGCAAAATTTTCTCTCCGAGATCCATCTGAG GTCATGGGGTTTTTATGCAAGCTTGTGCACTGGGAAAAGTGCAGACAGGATEST: gi|162163641|gb|FC340266.1|FC340266
genomic: CTGTAGCCAAACCGACTGAAGCAAAATTTTCTCTCCGAGATCCATCTGAGgtttgtaact ... gtcattacagGTCATGGGGTTTTTATGCAAGCTTGTGCACTGGGAAAAGTGCAGACAGGAT
EST: CTGTAGCCAAACCGACTGAAGCAAAATTTTCTCTCCGAGATCCATCTGAG GTCATGGGGTTTTTATGCAAGCTTGTGCACTGGGAAAAGTGCAGACAGGATEST: gi|162151213|gb|FC327693.1|FC327693
genomic: CTGTAGCCAAACCGACTGAAGCAAAATTTTCTCTCCGAGATCCATCTGAGgtttgtaact ... gtcattacagGTCATGGGGTTTTTATGCAAGCTTGTGCACTGGGAAAAGTGCAGACAGGAT
EST: CTGTAGCCAAACCGACTGAAGCAAAATTTTCTCTCCGAGATCCATCTGAG GTCATGGGGTTTTTATGCAAGCTTGTGCACTGGGAAAAGTGCEST: gi|162164955|gb|FC342146.1|FC342146
genomic: CTGTAGCCAAACCGACTGAAGCAAAATTTTCTCTCCGAGATCCATCTGAGgtttgtaact ... gtcattacagGTCATGGGGTTTTTATGCAAGCTTGTGCACTGGGAAAAGTGC
EST: CTGTAGCCAAACCGACTGAAGCAAAATTTTCTCTCCGAGATCCATCTGAG GTCATGGGGTTTTTATGCAAGCTTGTGCACTGGGAAAAGTGCAGACAGGATEST: gi|162208296|gb|FC384400.1|FC384400
genomic: CTGTAGCCAAACCGACTGAAGCAAAATTTTCTCTCCGAGATCCATCTGAGgtttgtaact ... gtcattacagGTCATGGGGTTTTTATGCAAGCTTGTGCACTGGGAAAAGTGCAGACAGGAT
EST: CTGTAGCCAAACCGACTGAAGCAAAATTTTCTCTCCGAGATCCATCTGAG GTCATGGGGTTTTTATGCAAGCTTGTGCACTGGGAAAAGTGCAGACAGGAT
genomic: CTGTAGCCAAACCGACTGAAGCAAAATTTTCTCTCCGAGATCCATCTGAGgtttgtaact ... gtcattacagGTCATGGGGTTTTTATGCAAGCTTGTGCACTGGGAAAAGTGCAGACAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGTCAATTCGACAAAATACGGCTGCAGTATTTTGGTGTCTTCTGTAGCCAAACCGACTGAAGCAAAATTTTCTCTCCGAGATCCATCTGAGgtttgtaactcttgaagccctacaatacattcaggacccgtacctcattaagacaacaaattccaccttatgcagaatagatggaatggtcactaatattgtggtgttccgtcattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC