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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTAAAAGAGTTTCGAGGCCATACTTCATATGTTAATGACTCTATTTTTGCAAGTGATGGTGCCCGAGTGATTACAGCCTCGAGCGATGGCTCTGTGAAAgtgagtacttttggctttttgtaaaatgattaaattctgattgatcacagctattgttgtgatttacgttgcaaatgcatacttatgttagaaaggatgg...

Basic information

species Physcomitrella patens
transcript PP1S31_68V6.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37829082|gb|BJ587094.1|BJ587094
EST:     CAAGTGATGGTGCCCGAGTGATTACAGCCTCGAGCGATGGCTCTGTGAAA                         GTTTGGGACGTGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCT
genomic: CAAGTGATGGTGCCCGAGTGATTACAGCCTCGAGCGATGGCTCTGTGAAAgtgagtactt ... tacctggcagGTTTGGGACGTGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCT
EST: gi|67696983|gb|BJ957216.1|BJ957216
EST:     CAAGTGATGGTGCCCGAGTGATTACAGCCTCGAGCGATGGCTCTGTGAAA                         GTTTGGGACGTGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCT
genomic: CAAGTGATGGTGCCCGAGTGATTACAGCCTCGAGCGATGGCTCTGTGAAAgtgagtactt ... tacctggcagGTTTGGGACGTGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCT
EST: gi|208354419|gb|DC953825.1|DC953825
EST:     CAAGTGATGGTGCCCGAGTGATTACAGCCTCGAGCGATGGCTCTGTGAAA                         GTTTGGGACGTGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCT
genomic: CAAGTGATGGTGCCCGAGTGATTACAGCCTCGAGCGATGGCTCTGTGAAAgtgagtactt ... tacctggcagGTTTGGGACGTGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCT
EST: gi|37833181|gb|BJ591193.1|BJ591193
EST:     CAAGTGATGGTGCCCGAGTGATTACAGCCTCGAGCGATGGCTCTGTGAAA                         GTTTGGGACGTGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCT
genomic: CAAGTGATGGTGCCCGAGTGATTACAGCCTCGAGCGATGGCTCTGTGAAAgtgagtactt ... tacctggcagGTTTGGGACGTGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCT
EST: gi|67726106|gb|BJ976365.1|BJ976365
EST:     CAAGTGATGGTGCCCGAGTGATTACAGCCTCGAGCGATGGCTCTGTGAAA                         GTTTGGGACGTGGAAACCACAGATTGTCTACACACTTTCAAACCACCGCCT
genomic: CAAGTGATGGTGCCCGAGTGATTACAGCCTCGAGCGATGGCTCTGTGAAAgtgagtactt ... tacctggcagGTTTGGGACGTGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCT
EST: gi|208347871|gb|DC917592.1|DC917592
EST:     CAAGTGATGGTGCCCGAGTGATTACAGCCTCGAGCGATGGCTCTGTGAAA                         GTTTGGGACGTGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCT
genomic: CAAGTGATGGTGCCCGAGTGATTACAGCCTCGAGCGATGGCTCTGTGAAAgtgagtactt ... tacctggcagGTTTGGGACGTGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCT
EST: gi|37834363|gb|BJ592375.1|BJ592375
EST:     CAAGTGATGGTGCCCGAGTGATTACAGCCTCGAGCGATGGCTCTGTGAAA                         GTTTGGGACGTGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCT
genomic: CAAGTGATGGTGCCCGAGTGATTACAGCCTCGAGCGATGGCTCTGTGAAAgtgagtactt ... tacctggcagGTTTGGGACGTGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCT
EST: gi|37840113|gb|BJ598121.1|BJ598121
EST:     CGAGTGATTACANCNTCGAGCGATGGCTCTGTGAAA                         GTTTGGGACGTGAAAACCACAGATTGGTGTACACACTTTCAAACCACCGCC
genomic: CGAGTGATTACAGCCTCGAGCGATGGCTCTGTGAAAgtgagtactt ... tacctggcagGTTTGGGACGTGAAAACCACAGATT-GTCTACACACTTTCAAACCACCGCC