Skip to another splice site:
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 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGAGCATCTTCGATGCCAAGGCAGGAATTGCCTTGAGTGACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttggtgtaatctctggtgttgtggatcgtgtacttttgggcggtgtcggttacgggtaagatgtggttttgtcttgactgttgtgtgaatgttttgcag

Basic information

species Physcomitrella patens
transcript PP1S309_73V6.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S309_73V6.2 (Physcomitrella patens), 5'ss of exon 11
lower sequence: LOC_Os02g07490.1 (Oryza sativa), 5'ss of exon 13
GTCGAGCATCTTCGATGCCAAGGCAGGAATTGCCTTGAGTGACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaa-ttttggtgtaatctctggtgttgtggatcgtgtacttttgggcggtgtcggttacgggtaagatgtggttttgtcttgactgttgtgtgaatgttttgcag
||| |||||||| ||||||||||| || ||||   ||||       ||  | ||||| ||||| |||||||||||||||||||||||||||| | | |   | |   |  |   |   |  |   |  |  |||        | | |     ||   |  || || |||        |||| | |           
GTCAAGCATCTTTGATGCCAAGGCTGGTATTGGACTGAGCTCTTCCTTCATGAAGCTTGTGTCATGGTATGACAACGAGTGGGGCTACAGgtgagtgtctatatttccattaaggggcttaactcttcatctttttttccaattgttctattgtccta-atgattctgttccattctttgtttcag----------

upper sequence: PP1S309_73V6.2 (Physcomitrella patens), 5'ss of exon 11
lower sequence: GRMZM2G051004_T01 (Zea mays), 5'ss of exon 13
GTCGAGCATCTTCGATGCCAAGGCAGGAATTGCCTTGAGTGACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttggtgtaatctctggtgttgtggatcgtgtacttttgggcggtgtcggttacgggtaagatgtggttttgtcttgactgttgtgtgaatgttttgcag
||| |||||||| ||||||||||| || || |   ||||       ||  | ||||| ||||| ||||||||||||||||||||||||||||||     || |  |  ||  |    || ||| | |      |       |     ||   ||||   | |||  ||  |  |   |      |||  ||| | 
GTCAAGCATCTTTGATGCCAAGGCTGGTATCGGACTGAGCTCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaag---agtttgttacctatttaattgcatcatttgtcgaagtcaaaccttctacacacctaaggccttgttcggttattcccaatacac--atggattggat

upper sequence: PP1S309_73V6.2 (Physcomitrella patens), 5'ss of exon 11
lower sequence: GRMZM2G104632_T01 (Zea mays), 5'ss of exon 13
GTCGAGCATCTTCGATGCCAAGGCAGGAATTGCCTTGAGTGACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttggtgtaatctctggtgttgtggatcgtgtacttttgggcg-gtgtcggttacgggtaagat-gtggttttgtcttgactgttgtgtgaatgttttgcag
||| |||||||| ||||||||||| || ||||   ||||       ||  | ||||| ||||| |||||||||||||||||||||||||||||    |    || | | |   |||| |  |  | |  |   |||      |      | | ||||||  |   ||||  ||||| |                   
GTCAAGCATCTTTGATGCCAAGGCTGGTATTGGACTGAGCTCTTCCTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaggagttcgctactttgtttcgttgcg--ttatttgttgaagggtacaccttccacgctgctaagatcatttgtttgctttgacag-------------------

upper sequence: PP1S309_73V6.2 (Physcomitrella patens), 5'ss of exon 11
lower sequence: GLYMA16G09020.1 (Glycine max), 5'ss of exon 13
GTCGAGCATCTTCGATGCCAAGGCAGGAATTGCCTTGAGTGACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgta-------attttg---gtgtaatct----ctggtgttgtggatcgtgtact--tttgggcggtgtcggttacgggtaagatgtggttttgtcttgactgttgtgtgaatgttttgcag-----
|||||| ||||| ||||| ||||| || |||||  | ||||     ||||| |||||||| |||||||||||||| |||||||| ||||||||       ||||||    ||||  |     |  |   ||    ||||   |   |||     |      || | | | |    ||   ||   ||||   || | |||||| ||||        
GTCGAGTATCTTTGATGCTAAGGCTGGCATTGCGCTTAGTGCTTCCTTTGTTAAGCTGGTTTCGTGGTATGACAATGAGTGGGGTTACAGgtatgtgtgtattttgtgtatgtagaccaaaaccagcactgatattcgtaggccaattttaatagcagaaatttctgttcatgc-tgacctttagttgatatttttttgaatggtttgtgttgcag

upper sequence: PP1S309_73V6.2 (Physcomitrella patens), 5'ss of exon 11
lower sequence: GLYMA03G22790.1 (Glycine max), 5'ss of exon 13
GTCGAGCATCTTCGATGCCAAGGCAGGAATTGCCTTGAGTGACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttggtgtaatctctggtgttgtggatcgtgtacttttgggcggtgtcggttacgggtaagatgtggttttgtcttgactgttgtgtgaatgttttgcag
||| || ||||| ||||||||||| || |||||  | ||||     ||||| |||||||| |||||||||||||| |||||||| ||||||||  |   ||| | | | || | |   |  |   | | |||  |    ||  |        |  ||| |  ||   |  |   |||||                
GTCAAGTATCTTTGATGCCAAGGCTGGCATTGCACTAAGTGCTTCCTTTGTTAAGCTGGTTTCGTGGTATGACAATGAGTGGGGTTACAGgtatgt---gtgcattttgtg-tatgtagagtgcagaaatttctgttcatgcggacctttaatt-gatatttttgaatggtttttgttgcag-------------

upper sequence: PP1S309_73V6.2 (Physcomitrella patens), 5'ss of exon 11
lower sequence: EFJ32914 (Selaginella moellendorffii), 5'ss of exon 12
GTCGAGCATCTTCGATGCCAAGGCAGGAATTGCCTTGAGTGACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttggtgtaatctctggtgttgtggatcgtgtacttttgggcggtgtcggttacgggtaagatgtggttttgtcttgactgttgtgtgaatgttttgcag
|||||||||||| || ||    || |||||| | |||||  | |  || |||||||| ||| |||||||||||||||| ||||| |||||||    ||    |  || || || |  ||     |    | ||      | | | || |  |                                           
GTCGAGCATCTTTGACGCTGCTGCTGGAATTCCATTGAGCAAAAGCTTCGTCAAGCTCGTGGCGTGGTATGACAACGAATGGGGATACAGgtgtgcttctatttctcgctcgtttcatgagatttagcttcttc-----tcttgttttccag-------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208386569|gb|DC952764.1|DC952764
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|67579087|gb|BJ951238.1|BJ951238
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|15590664|gb|BI675280.1|BI675280
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|18337239|gb|BJ169263.1|BJ169263
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|67727324|gb|BJ977583.1|BJ977583
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAATAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|208372490|gb|DC948730.1|DC948730
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|208374872|gb|DC956145.1|DC956145
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|67727955|gb|BJ978214.1|BJ978214
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|208389192|gb|DC945768.1|DC945768
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|162157964|gb|FC334924.1|FC334924
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|67720368|gb|BJ970627.1|BJ970627
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|18336858|gb|BJ168881.1|BJ168881
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|37848736|gb|BJ606744.1|BJ606744
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|208369274|gb|DC956065.1|DC956065
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|67727959|gb|BJ978218.1|BJ978218
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|162152341|gb|FC328528.1|FC328528
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|208367067|gb|DC947801.1|DC947801
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|208373126|gb|DC948891.1|DC948891
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|67723914|gb|BJ974173.1|BJ974173
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|208371298|gb|DC944462.1|DC944462
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|67724745|gb|BJ975004.1|BJ975004
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|37821494|gb|BJ579560.1|BJ579560
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|37841593|gb|BJ599601.1|BJ599601
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|162182183|gb|FC358198.1|FC358198
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|67725323|gb|BJ975582.1|BJ975582
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|208393917|gb|DC946127.1|DC946127
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTAGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|67725153|gb|BJ975412.1|BJ975412
EST:     GACAAGTTTGCCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTCGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|67726807|gb|BJ977066.1|BJ977066
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|162182184|gb|FC358199.1|FC358199
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|37851285|gb|BJ609293.1|BJ609293
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|67725858|gb|BJ976117.1|BJ976117
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|208388488|gb|DC957070.1|DC957070
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|208394113|gb|DC957194.1|DC957194
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|162268831|gb|FC445679.1|FC445679
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|67726975|gb|BJ977234.1|BJ977234
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|18341731|gb|BJ173766.1|BJ173766
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|18340751|gb|BJ172782.1|BJ172782
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|208351393|gb|DC921754.1|DC921754
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|162278138|gb|FC454373.1|FC454373
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|208367555|gb|DC955702.1|DC955702
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|18341223|gb|BJ173256.1|BJ173256
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|67723807|gb|BJ974066.1|BJ974066
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|208389399|gb|DC953237.1|DC953237
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|67694183|gb|BJ954416.1|BJ954416
EST:     GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
EST: gi|67724801|gb|BJ975060.1|BJ975060
EST:     GACAGGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAG                         CAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT
genomic: GACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttgg ... tgttttgcagCAACCGAGTTGTGGACCTGATCTTGCACATGGCTGGAGTAAAGGCCAACCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCGAGCATCTTCGATGCCAAGGCAGGAATTGCCTTGAGTGACAAGTTTGTCAAGCTGGTGTCGTGGTATGACAACGAGTGGGGCTACAGgtaattttggtgtaatctctggtgttgtggatcgtgtacttttgggcggtgtcggttacgggtaagatgtggttttgtcttgactgttgtgtgaatgttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG