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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCGTGTGTGCACCCGTTCTTTGATGAGCTAAGGGATCCTAACTGCCGGCTTCCGAATGGGCGGCCACTGCCCTCTCTGTTCAACTTCAAAACCCAAGgtgagacattgtggcggtgcatagtcgtgtcgccatcctgaagatgacagttgagttatttattgtcagggagtggttgggatctggtgtccagtgttttggattgtacattttcatgatgcaaaggaaggatgagaaggtggtggaaaatgtaacgcgtttggatgtggtggtggagcag

Basic information

species Physcomitrella patens
transcript PP1S306_43V6.2
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18340427|gb|BJ172455.1|BJ172455
EST:     GCTTCCGAATGGGCGGCCACTGCCCTCTCTGTTCAACTTCAAAACCCAAG                         AGTTGAAGGGTGCAACTCCTGATATTCTGCAGCGTTTGATACCCGAGCACG
genomic: GCTTCCGAATGGGCGGCCACTGCCCTCTCTGTTCAACTTCAAAACCCAAGgtgagacatt ... ggtggagcagAGTTGAAGGGTGCAACTCCTGATATTCTGCAGCGTTTGATACCCGAGCACG
EST: gi|15729239|gb|BI741214.1|BI741214
EST:     GCTTCCGAATGGGCGGCCACTGCCCTCTCTGTTCAACTTCAAAACCCAAG                         AGTTGAAGGGTGCAACTCCTGATATTCTGCAGCGTTTGATACCCGAGCACG
genomic: GCTTCCGAATGGGCGGCCACTGCCCTCTCTGTTCAACTTCAAAACCCAAGgtgagacatt ... ggtggagcagAGTTGAAGGGTGCAACTCCTGATATTCTGCAGCGTTTGATACCCGAGCACG
EST: gi|37823641|gb|BJ581707.1|BJ581707
EST:     GCTTCCGAATGGGCGGCCACTGCCCTCTCTGTTCAACTTCAAAACCCAAG                         AGTTGAAGGGTGCAACTCCTGATATTCTGCAGCGTTTGATACCCGAGCACG
genomic: GCTTCCGAATGGGCGGCCACTGCCCTCTCTGTTCAACTTCAAAACCCAAGgtgagacatt ... ggtggagcagAGTTGAAGGGTGCAACTCCTGATATTCTGCAGCGTTTGATACCCGAGCACG
EST: gi|100449000|gb|CJ973299.1|CJ973299
EST:     GCTTCCGAATGGGCGGCCACTGCCCTCTCTGTTCAACTTCAAAACCCAAG                         AGTTGAAGGGTGCAACTCCTGATATTCTGCAGCGTTTGATACCCGAGCACG
genomic: GCTTCCGAATGGGCGGCCACTGCCCTCTCTGTTCAACTTCAAAACCCAAGgtgagacatt ... ggtggagcagAGTTGAAGGGTGCAACTCCTGATATTCTGCAGCGTTTGATACCCGAGCACG
EST: gi|18338380|gb|BJ170404.1|BJ170404
EST:     GCTTCCGAATGGGCGGCCACTGCCCTCTCTGTTCAACTTCAAAACCCAAG                         AGTTGAAGGGTGCAACTCCTGATATTCTGCAGCGTTTGATACCCGAGCACG
genomic: GCTTCCGAATGGGCGGCCACTGCCCTCTCTGTTCAACTTCAAAACCCAAGgtgagacatt ... ggtggagcagAGTTGAAGGGTGCAACTCCTGATATTCTGCAGCGTTTGATACCCGAGCACG
EST: gi|67694940|gb|BJ955173.1|BJ955173
EST:     GCTTCCGAATGGGCGGCCACTGCCCTCTCTGTTCAACTTCAAAACCCAAG                         AGTTGAAGGGTGCAACTCCTGATATTCTGCAGCGTTTGATACCCGAGCACG
genomic: GCTTCCGAATGGGCGGCCACTGCCCTCTCTGTTCAACTTCAAAACCCAAGgtgagacatt ... ggtggagcagAGTTGAAGGGTGCAACTCCTGATATTCTGCAGCGTTTGATACCCGAGCACG