1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGTGGGCTTCTCCCTCTTCATGGGATTATCTGTGCGTCAGTACTTCACAGAGTTTTCGATGCGTGCTGGACATGGCCCCGTGCACACAAATTCCCGATGGgtgtgtcacttttcgaacaaatctcacactccccttcgtttgctttgtcatgcaagttttgctcttggctagatcatcaaattgaagcttgatttgtctaacattattggtttcgtgttcaatatgtaccag
species | Physcomitrella patens |
transcript | PP1S297_61V6.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGTNTTCGATGCGTGCTGGACATGGCCCCGTGCACACAAATTCCCGATGG TTCAACGACATCCTCAATGTCTTCTTCTCCTCTTCCGTGATTGTATGCTTCEST: gi|18339947|gb|BJ171975.1|BJ171975
genomic: AGTTTTCGATGCGTGCTGGACATGGCCCCGTGCACACAAATTCCCGATGGgtgtgtcact ... tatgtaccagTTCAACGACATCCTCAATGTCTTCTTCTCCTCTTCCGTGATTGTATGCTTC
EST: AGTTTTCGATGCGTGCTGGACATGGCCCCGTGCACACAAATTCCCGATGG TTCAACGACATCCTCAATGTCTTCTTCTCCTCTTCCGTGATTGTATGCTTC
genomic: AGTTTTCGATGCGTGCTGGACATGGCCCCGTGCACACAAATTCCCGATGGgtgtgtcact ... tatgtaccagTTCAACGACATCCTCAATGTCTTCTTCTCCTCTTCCGTGATTGTATGCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGGGCTTCTCCCTCTTCATGGGATTATCTGTGCGTCAGTACTTCACAGAGTTTTCGATGCGTGCTGGACATGGCCCCGTGCACACAAATTCCCGATGGgtgtgtcacttttcgaacaaatctcacactccccttcgtttgctttgtcatgcaagttttgctcttggctagatcatcaaattgaagcttgatttgtctaacattattggtttcgtgttcaatatgtaccag
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