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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGTTTCATTTATAACGAGTTCTTCTCAGTTTCATTTGGATTTTTTGGGGGATCAGCGTATCAGTGTCCGGACCCACAGTACTCTGTCAAGAATTGCCCgtaagttcctttcagtagtatgttatttgtggtcgtttagtttcttagagaagcttgaaagctgtgtaatgtcttttttgggctctcctcccgtagtcctttagaaatttgttgtgtgcttcttagcttcagcaccagtttccgaatcaattagttaagttggtttggttatatctgattttag

Basic information

species Physcomitrella patens
transcript PP1S296_62V6.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162236419|gb|FC412786.1|FC412786
EST:     GGATCAGCGTATCAGTGTCCGGACCCACAGTACTCTGTCAAGAATTGCCC                         GACGGCGACTACGTCGGGAGTGGAGAAATGGTCTTATGAGCCTTATGCATT
genomic: GGATCAGCGTATCAGTGTCCGGACCCACAGTACTCTGTCAAGAATTGCCCgtaagttcct ... ctgattttagGACGGCGACTACGTCGGGAGTGGAGAAATGGTCTTATGAGCCTTATGCATT
EST: gi|162213271|gb|FC389351.1|FC389351
EST:     GGATCAGCGTATCAGTGTCCGGACCCACAGTACTCTGTCAAGAATTGCCC                         GACGGCGACTACGTCGGGAGTGGAGAAATGGTCTTATGAGCCTTATGCATT
genomic: GGATCAGCGTATCAGTGTCCGGACCCACAGTACTCTGTCAAGAATTGCCCgtaagttcct ... ctgattttagGACGGCGACTACGTCGGGAGTGGAGAAATGGTCTTATGAGCCTTATGCATT