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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGTATCTTTAGGAACCGACCTAATACTTCACCGAAAGATCCAGAGGCCAATCGCAGCATCCAGAGACCGTGGTTCATTCCTCGCTTTTCCCGACCAAgtacgctgcagcgaaaattctagcacactcagaaattgtgtttaaatagtcaagcttctataggattgaactcgcacataacatgatgtcttcattcattttggtgatataggttgtgtaggacaaatcgtcggctcataaatgaccatctattttttgattgacgttgatatag

Basic information

species Physcomitrella patens
transcript PP1S284_52V6.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100408711|gb|BY974249.1|BY974249
EST:     ATCGCAGCATCCAGAGACCGTGGTTCATTCCTCGCTTTTCCCGNNAC-AA                         ATACA-GCAGGGAGAAATCGAATGGAGTGTTTGAACCAG
genomic: ATCGCAGCATCCAGAGACCGTGGTTCATTCCTCGCTTTTCCCG--ACCAAgtacgctgca ... gttgatatagATACAAGCAGGGAGAAATCGAATGGAGTGTTTGAACCAG
EST: gi|100449007|gb|CJ973306.1|CJ973306
EST:     CAATCGCAGCATCCAGAGACCGTGGTTCATTCCTCGCTTTTCCCGACCAA                         ATACAAGCAGGGAGAAATCGAATGGAGTGTTTGAACCAG
genomic: CAATCGCAGCATCCAGAGACCGTGGTTCATTCCTCGCTTTTCCCGACCAAgtacgctgca ... gttgatatagATACAAGCAGGGAGAAATCGAATGGAGTGTTTGAACCAG
EST: gi|100390416|gb|BY952824.1|BY952824
EST:     CAATCGCAGCATCCAGAGACCGTGGTTCATTCCTCGCTTTTCCCGACCAA                         ATACAAGCAGGGAGAAATCGAATGGAGTGTTTGAACCAG
genomic: CAATCGCAGCATCCAGAGACCGTGGTTCATTCCTCGCTTTTCCCGACCAAgtacgctgca ... gttgatatagATACAAGCAGGGAGAAATCGAATGGAGTGTTTGAACCAG
EST: gi|100361367|gb|BY965805.1|BY965805
EST:     CAATCGCAGCATCCAGAGACCGTGGTTCATTCCTCGCTTTTCCCGACCAA                         ATACAAGCAGGGAGAAATCGAATGGAGTGTTTGAACCAG
genomic: CAATCGCAGCATCCAGAGACCGTGGTTCATTCCTCGCTTTTCCCGACCAAgtacgctgca ... gttgatatagATACAAGCAGGGAGAAATCGAATGGAGTGTTTGAACCAG