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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTCATTGTACCGTGAAGCACCAGGCATGGACGTGTTCCGACCTGACCAGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctactactcacctaatattgtaaagaagatttttcatacgcgttagtagagtatttgtgttgaatgtacgaatctcatcttacgtatttgctccg...

Basic information

species Physcomitrella patens
transcript PP1S277_10V6.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S277_10V6.2 (Physcomitrella patens), 5'ss of exon 10
lower sequence: EDP07040 (Chlamydomonas reinhardtii), 5'ss of exon 13
GCAGTCATTGTACCGTGAAGCACCAGGCATGGACGTGTTCCGACCTGACCAGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctactactcacctaatattgtaaagaagatttttcatacgcgttagtagagtatttgtgttgaatgtacg-aatctcatcttac-gtatttgctccg---------------------------------------------------------------------------------------------
||||||  |||||   || || || ||||||||||||| ||| || ||||||   || ||| || ||||||| |||||| | || |||||||||||||||||  |     |    |      | |    ||  | |   ||  ||||  ||  |  | |    | |   |  ||  | || |  | | |    ||   |  |                                                                                             
GCAGTCGCTGTACGAGGAGGCGCCCGGCATGGACGTGTACCGGCCCGACCAGGTCACGCCCATCCCCAACTTTTTCCTTGCGGGCTCCTACACCAAGCAGgtgagaggggatatgcgcgtcgtggccgggagcaatg--caagcgcggaagccgc-tgtgaacgcttggtagacacagtcccgccctgccacgttaattatgtacgggctcggcaagtcgcgactctcactcgcttgcctgtcacccgccgcgcccgctcacgcacgcgcttgcgtccttttcacgcatctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162230034|gb|FC405974.1|FC405974
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162151766|gb|FC328623.1|FC328623
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162167139|gb|FC343615.1|FC343615
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162225910|gb|FC400954.1|FC400954
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162166538|gb|FC343235.1|FC343235
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|18333028|gb|BJ165042.1|BJ165042
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162264024|gb|FC439254.1|FC439254
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|37847706|gb|BJ605714.1|BJ605714
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162198692|gb|FC373473.1|FC373473
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162274126|gb|FC450198.1|FC450198
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162174878|gb|FC351670.1|FC351670
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162208106|gb|FC384262.1|FC384262
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162267925|gb|FC444006.1|FC444006
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|37852887|gb|BJ610895.1|BJ610895
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTAAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|208356633|gb|DC922423.1|DC922423
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|18341056|gb|BJ173089.1|BJ173089
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162225911|gb|FC400955.1|FC400955
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACA
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACA
EST: gi|162155412|gb|FC332026.1|FC332026
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|37834460|gb|BJ592472.1|BJ592472
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162188825|gb|FC364839.1|FC364839
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|208349557|gb|DC921989.1|DC921989
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162174877|gb|FC351669.1|FC351669
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162215092|gb|FC391562.1|FC391562
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAAGGTCCTACACCAAGCAT                         GATTACATTGACTGCATGTAGGGAGCGACTCTGT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGT
EST: gi|162151767|gb|FC328624.1|FC328624
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162150290|gb|FC326375.1|FC326375
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|208383087|gb|DC919534.1|DC919534
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|18335957|gb|BJ167978.1|BJ167978
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162241669|gb|FC418652.1|FC418652
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|37844529|gb|BJ602537.1|BJ602537
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTAAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|37850391|gb|BJ608399.1|BJ608399
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162215091|gb|FC391561.1|FC391561
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162262810|gb|FC439255.1|FC439255
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|18334473|gb|BJ166490.1|BJ166490
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|208395110|gb|DC923909.1|DC923909
EST:     AGAAGACTCCCGTCTCCAACTTCTTCTTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162274125|gb|FC450197.1|FC450197
EST:     AGAAGACTCCCGTCTCCAACTTTTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162192889|gb|FC369883.1|FC369883
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|7067325|gb|AW497180.1|AW497180
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162241668|gb|FC418651.1|FC418651
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|18337566|gb|BJ169590.1|BJ169590
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162167476|gb|FC344193.1|FC344193
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162170375|gb|FC346780.1|FC346780
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|18335620|gb|BJ167640.1|BJ167640
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
EST: gi|162151153|gb|FC327152.1|FC327152
EST:     AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAG                         GATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT
genomic: AGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 30 (upstream exon), 20 (downstream exon)
Score: 5

GCAGTCATTGTACCGTGAAGCACCAGGCATGGACGTGTTCCGACCTGACCAGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctact ... gctggaacagGATTACATTGACAGCATGGAGGGAGCGACTCTGTCAGGACGACAGACCTCTGCTCGCATCAACGAAGCAGGTCAATTTCTTCACGACCTGCGACAGAAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAGTCATTGTACCGTGAAGCACCAGGCATGGACGTGTTCCGACCTGACCAGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctactactcacctaatattgtaaagaagatttttcatacgcgttagtagagtatttgtgttgaatgtacgaatctcatcttacgtatttgctccg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaga