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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACTTTAAGGCTGCCAACATTCTGTTGGATGATGAGCTTAACCCACACGTTTCGGATTGTGGCTTGGCCGCTTTCGCTCCATCTGGCGTCGAACGGCAGgtctgtacccttctcaatccactcacatgctctacagatgttgttatttgcttaagtcatgtcttcgaatggttcctaagaatgcaggacaaacaatcagttactttctagcaagtttgttgactagttaccttgatattaaaaaccag

Basic information

species Physcomitrella patens
transcript PP1S242_37V6.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S242_37V6.1 (Physcomitrella patens), 5'ss of exon 11
lower sequence: LOC_Os03g27990.1 (Oryza sativa), 5'ss of exon 13
---CAACTTTAAGGCTGCCAACATTCTGTTGGATGATGAGCTTAACCCACACGTTTCGGATTGTGGCTTGGCCGCTTTCGCTCCATCTGGCGTCGAACGGCAGgtctgtacccttctcaatccac--tcacatgctctacagatgttgttatttgctta--agtcatgtcttcgaatggttcctaagaatgcaggacaaacaatcagttactttctagcaagtttgttgactagttaccttgatattaaaaaccag
    || || ||| |  | ||||| ||||||||| ||||||||||||| || ||||| |||||||| || || |   |   |||      |   ||||  |||||       ||   ||||  ||  |   ||  |  | ||       | |   ||||  ||| |   |||   | |  | |      || |    ||  ||                                                     
CAAGAATTTCAAGTCATCTAACATACTGTTGGATAATGAGCTTAACCCCCATGTTTCAGATTGTGGGTTTGCAGAGCTTATTCC---CAACCAGGAACTCCAGgtgatagtgctgaacaatgtaccatttgatatttgatagcctgctctgtccacttacaagttacaactttaca-gactgcatgctctgaaccttaagaaac----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15327537|gb|BI488291.1|BI488291
EST:     TTTCGGATTGTGGCTTGGCCGCTTTCGCTCCATCTGGCGTCGAACGGCAG                         GCTTCTGCGCAATTGTTGGGCTCCGTCGGATACAGCGCTCCAGAATACTCC
genomic: TTTCGGATTGTGGCTTGGCCGCTTTCGCTCCATCTGGCGTCGAACGGCAGgtctgtaccc ... taaaaaccagGCTTCTGCGCAATTGTTGGGCTCCGTCGGATACAGCGCTCCAGAATACTCC