1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AACTGGAAATGCAGTAGATGAAACCACATTGTGTGGACCCCTTCATTCCAAGCACTCTAAGGCATGCTTCGAAGAGGGTATTAAGAAAATCAAGGCTCAGgcaatgattctgtaccttcatgtcactaacgtgcttattcagctgagtgtgcttagaaattagccttgagcattgattgtatttagcaccattgtatcag...
species | Physcomitrella patens |
transcript | PP1S237_29V6.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGCACTCTAAGGCATGCTTCGAAGAGGGTATTAAGAAAATCAAGGCTCAG GGCGGCAAAATTTTGACTGGTGGCTCTGTGATTGATCGTGATGGCAACTTTEST: gi|162180806|gb|FC358307.1|FC358307
genomic: AGCACTCTAAGGCATGCTTCGAAGAGGGTATTAAGAAAATCAAGGCTCAGgcaatgattc ... cgcttttcagGGCGGCAAAATTTTGACTGGTGGCTCTGTGATTGATCGTGATGGCAACTTT
EST: AAGAGGGTATTAAGAAAATCAAGGCTCAG GGCGGCAAAATTTTGACTGGTGGCTCTGTGATTGATCGTGATGGCAACTTTEST: gi|162153738|gb|FC329141.1|FC329141
genomic: AAGAGGGTATTAAGAAAATCAAGGCTCAGgcaatgattc ... cgcttttcagGGCGGCAAAATTTTGACTGGTGGCTCTGTGATTGATCGTGATGGCAACTTT
EST: AGCACTCTAAGGCATGCTTCGAAGAGGGTATTAAGAAAATCAAGGCTCAG GGCGGCAAAATTTTGACTGGTGGCTCTGTGATTGATCGTGATGGCAACTTTEST: gi|162268955|gb|FC445759.1|FC445759
genomic: AGCACTCTAAGGCATGCTTCGAAGAGGGTATTAAGAAAATCAAGGCTCAGgcaatgattc ... cgcttttcagGGCGGCAAAATTTTGACTGGTGGCTCTGTGATTGATCGTGATGGCAACTTT
EST: AGCACTCTAAGGCATGCTTCGAAGAGGGTATTAAGAAAATCAAGGCTCAG GGCGGCAAAATTTTGACTGGTGGCTCTGTGATTGATCGTGATGGCAACTTT
genomic: AGCACTCTAAGGCATGCTTCGAAGAGGGTATTAAGAAAATCAAGGCTCAGgcaatgattc ... cgcttttcagGGCGGCAAAATTTTGACTGGTGGCTCTGTGATTGATCGTGATGGCAACTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTGGAAATGCAGTAGATGAAACCACATTGTGTGGACCCCTTCATTCCAAGCACTCTAAGGCATGCTTCGAAGAGGGTATTAAGAAAATCAAGGCTCAGgcaatgattctgtaccttcatgtcactaacgtgcttattcagctgagtgtgcttagaaattagccttgagcattgattgtatttagcaccattgtatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA