1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TCTTGTTTCCTACTGGATTTACTTGATGCACCGAGTTGGAGACCTAGATTCAAATTCCATCATTGGAGTCTTTCTCTTCTCGGTGCTATCATATGCATCAgtaagttatcagtgcaactttcctttgattgtgttattcttcatattctttggtccacttatttgtagaagatgtgtttcgtttacctgattcagaaact...
species | Physcomitrella patens |
transcript | PP1S22_329V6.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CAAATTCCATCATTGGAGTCTTTCTCTTCTCGGTGCTATCATATGCATCA CTATAATGTTTATGATCTCGTTTGTATTCACCATAGTCGCCCTTGCGCTTGEST: gi|162190992|gb|FC368398.1|FC368398
genomic: CAAATTCCATCATTGGAGTCTTTCTCTTCTCGGTGCTATCATATGCATCAgtaagttatc ... aattttgcagCTATAATGTTTATGATCTCGTTTGTATTCACCATAGTCGCCCTTGCGCTTG
EST: CAAATTCCATCATTGGAGTCTTTCTCTTCTCGGTGCTATCATATGCATCA CTATAATGTTTATGATCTCGTTTGTATTCACCATAGTCGCCCTTGCGCTTGEST: gi|162256927|gb|FC433029.1|FC433029
genomic: CAAATTCCATCATTGGAGTCTTTCTCTTCTCGGTGCTATCATATGCATCAgtaagttatc ... aattttgcagCTATAATGTTTATGATCTCGTTTGTATTCACCATAGTCGCCCTTGCGCTTG
EST: CAAATTCCATCATTGGAGTCTTTCTCTTCTCGGTGCTATCATATGCATCA CTATAATGTTTATGATCTCGTTTGTATTCACCATAGTCGCCCTTGCGCTTGEST: gi|162183794|gb|FC360711.1|FC360711
genomic: CAAATTCCATCATTGGAGTCTTTCTCTTCTCGGTGCTATCATATGCATCAgtaagttatc ... aattttgcagCTATAATGTTTATGATCTCGTTTGTATTCACCATAGTCGCCCTTGCGCTTG
EST: CAAATTCCATCATTGGAGTCTTTCTCTTCTCGGTGCTATCATATGCATCA CTATAATGTTTATGATCTCGTTTGTATTCACCATAGTCGCCCTTGCGCTTG
genomic: CAAATTCCATCATTGGAGTCTTTCTCTTCTCGGTGCTATCATATGCATCAgtaagttatc ... aattttgcagCTATAATGTTTATGATCTCGTTTGTATTCACCATAGTCGCCCTTGCGCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTGTTTCCTACTGGATTTACTTGATGCACCGAGTTGGAGACCTAGATTCAAATTCCATCATTGGAGTCTTTCTCTTCTCGGTGCTATCATATGCATCAgtaagttatcagtgcaactttcctttgattgtgttattcttcatattctttggtccacttatttgtagaagatgtgtttcgtttacctgattcagaaact
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