1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATGATTTACGGTAGCTTCGGTTGCACCCAAGGTTGGTTTTGCGCTACATGTGCAGTGTCTCCTCGCGCCAGgtgaagttccttgtgactatttgcaactctcatgttagtactttattctgaaggtagatcagtgtttgaaatttagtccacaatttaaaaacttgatatttacttaacttacagagttctcttgcag
species | Physcomitrella patens |
transcript | PP1S213_133V6.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GCGCTACATGTGCCAGTGTCTCCTCGCGCCAG GGGTGTGTCAAATATTTTGAAATTGTTNGTGAGAAAAAGGGGCGCTAGCTCEST: gi|37839304|gb|BJ597312.1|BJ597312
genomic: GCGCTACATGTG-CAGTGTCTCCTCGCGCCAGgtgaagttcc ... tctcttgcagGGGTGTGTCAAATATTTTGAAATTGTTTGTGAGAAAAAGGGGCGCTAGCTC
EST: TGCACCCAAGGTTGGTTTTGCGCTACATGTGCAGTGTCTCCTCGCGCCAG GGGTGTGTCAAATATTTTGAAATTGTTTGTGAGAAAAAGGGGCGCTAGCTCEST: gi|37837212|gb|BJ595220.1|BJ595220
genomic: TGCACCCAAGGTTGGTTTTGCGCTACATGTGCAGTGTCTCCTCGCGCCAGgtgaagttcc ... tctcttgcagGGGTGTGTCAAATATTTTGAAATTGTTTGTGAGAAAAAGGGGCGCTAGCTC
EST: GCACCCAAGGTTGGGTTTTGCGCTACATGTGCAGTGTCTCCTCGCGCCAG GGGTGTGTCAAATATTTTGAAATTGTTTGTGAGAAAAAGGGGCGCTAGCTCEST: gi|37852409|gb|BJ610417.1|BJ610417
genomic: GCACCCAAGGTT-GGTTTTGCGCTACATGTGCAGTGTCTCCTCGCGCCAGgtgaagttcc ... tctcttgcagGGGTGTGTCAAATATTTTGAAATTGTTTGTGAGAAAAAGGGGCGCTAGCTC
EST: TGCACCCAAGGTTGGTTTTGCGCTACATGTGCAGTGTCTCCTCGCGCCAG GGGTGTGTCAAATATTTTGAAATTGTTTGTGAGAAAAAGGGGCGCTAGCTC
genomic: TGCACCCAAGGTTGGTTTTGCGCTACATGTGCAGTGTCTCCTCGCGCCAGgtgaagttcc ... tctcttgcagGGGTGTGTCAAATATTTTGAAATTGTTTGTGAGAAAAAGGGGCGCTAGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGATTTACGGTAGCTTCGGTTGCACCCAAGGTTGGTTTTGCGCTACATGTGCAGTGTCTCCTCGCGCCAGgtgaagttccttgtgactatttgcaactctcatgttagtactttattctgaaggtagatcagtgtttgaaatttagtccacaatttaaaaacttgatatttacttaacttacagagttctcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC