1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTGAATACATCGGTTTTATTGGAGGCTTTCGAGGCAAGGTCTGCCCGTCAAGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTGgtgtgttacattcttttatgcagattcacgcttgttggttatttcactgtgtcgacagttccaagatgctgcaagatgtgtctttttgacgtgaaacact...
species | Physcomitrella patens |
transcript | PP1S209_135V6.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTG AATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCCEST: gi|37824726|gb|BJ582792.1|BJ582792
genomic: AGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTGgtgtgttaca ... tcttggacagAATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCC
EST: AGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTG AATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCCEST: gi|22491904|gb|BU051827.1|BU051827
genomic: AGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTGgtgtgttaca ... tcttggacagAATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCC
EST: AGCAGCTGCAGTTGCTTTGCGTTTGGCCTATTTATCGGGATCAGAAGCTG AATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCCEST: gi|162268243|gb|FC444532.1|FC444532
genomic: AGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTGgtgtgttaca ... tcttggacagAATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCC
EST: AGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTG AATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCCEST: gi|162242621|gb|FC414999.1|FC414999
genomic: AGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTGgtgtgttaca ... tcttggacagAATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCC
EST: AGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTG AATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCCEST: gi|67694398|gb|BJ954631.1|BJ954631
genomic: AGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTGgtgtgttaca ... tcttggacagAATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCC
EST: GCAGCTGCAGTNGCTTTGCGTTTGGCCAAAGGGATCGGGATCAGAAGCTG AATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCCEST: gi|37827697|gb|BJ585709.1|BJ585709
genomic: GCAGCTGCAGTTGCTTTGCGTTTGGCC-AAGGGATCGGGATCAGAAGCTGgtgtgttaca ... tcttggacagAATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCC
EST: AGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTG AATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCCEST: gi|162244830|gb|FC420182.1|FC420182
genomic: AGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTGgtgtgttaca ... tcttggacagAATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCC
EST: CAAGGGATCGGGATCAGAAGCTG AATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCCEST: gi|37843464|gb|BJ601472.1|BJ601472
genomic: CAAGGGATCGGGATCAGAAGCTGgtgtgttaca ... tcttggacagAATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCC
EST: CAGCTGCAGTTGCTTTGCGTTTGNCCAAGGGATCGGGATCAGAAGCTG AATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCCEST: gi|162156562|gb|FC332170.1|FC332170
genomic: CAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTGgtgtgttaca ... tcttggacagAATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCC
EST: GCAGCTGCAGTTGC-TTGCGTTTTGGCCAAGGGATCGGGATCAGAAGCTG AATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCCEST: gi|37850470|gb|BJ608478.1|BJ608478
genomic: GCAGCTGCAGTTGCTTTGCG-TTTGGCCAAGGGATCGGGATCAGAAGCTGgtgtgttaca ... tcttggacagAATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCC
EST: AGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTG AATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCCEST: gi|162242620|gb|FC414998.1|FC414998
genomic: AGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTGgtgtgttaca ... tcttggacagAATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCC
EST: AGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTG AATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCCEST: gi|162194101|gb|FC370276.1|FC370276
genomic: AGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTGgtgtgttaca ... tcttggacagAATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCC
EST: AGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTG AATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCCEST: gi|162185218|gb|FC361728.1|FC361728
genomic: AGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTGgtgtgttaca ... tcttggacagAATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCC
EST: AGCAGCTGCAGTTGCTATGCGTTTGGCCAAGGGATCGGGATCAGAAGCTG AATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCCEST: gi|162242623|gb|FC415001.1|FC415001
genomic: AGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTGgtgtgttaca ... tcttggacagAATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCC
EST: AGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTG AATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCC
genomic: AGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTGgtgtgttaca ... tcttggacagAATTCCAAGAAAACACGCCTGAACTGGTGGAATCAGCTCGTGCTCATTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAATACATCGGTTTTATTGGAGGCTTTCGAGGCAAGGTCTGCCCGTCAAGCAGCTGCAGTTGCTTTGCGTTTGGCCAAGGGATCGGGATCAGAAGCTGgtgtgttacattcttttatgcagattcacgcttgttggttatttcactgtgtcgacagttccaagatgctgcaagatgtgtctttttgacgtgaaacact
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG