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AGGCGTCATTGTCTACATTGCAGACAGCATGGGCGTTCGAGATATTTATGATACTGATGGGGATTCAGCTATCTCTACCAAAGAGCCTCTAGCTGTACTTgtaagctggttcaagtatctctttccagtttaacttgctctgaggcaccattaattgtagaagtttttatatgtaagcaatttgattatcttgtggattt...
species | Physcomitrella patens |
transcript | PP1S199_127V6.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATACTGATGGGGATTCAGCTATCTCTACCAAAGAGCCTCTAGCTGTACTT GTAAACAAGGGCACAGCGAGTGCTAGTGAAATTCTAGCGGGTGCTCTTAAGEST: gi|162195103|gb|FC371378.1|FC371378
genomic: ATACTGATGGGGATTCAGCTATCTCTACCAAAGAGCCTCTAGCTGTACTTgtaagctggt ... ttgatgccagGTAAACAAGGGCACAGCGAGTGCTAGTGAAATTCTAGCGGGTGCTCTTAAG
EST: ATACTGATGGGGATTCAGCTATCTCTACCAAAGAGCCTCTAGCTGTACTT GTAAACAAGGGCACAGCGAGTGCTAGTGAAATTCTAGCGGGTGCTCTTAAGEST: gi|37846883|gb|BJ604891.1|BJ604891
genomic: ATACTGATGGGGATTCAGCTATCTCTACCAAAGAGCCTCTAGCTGTACTTgtaagctggt ... ttgatgccagGTAAACAAGGGCACAGCGAGTGCTAGTGAAATTCTAGCGGGTGCTCTTAAG
EST: TAGCTGTACTT GTAAACAAGGGCACAGCGAGTGCTAGTGAAATTCTAGCGGGTGCTCTTAAGEST: gi|162150713|gb|FC327609.1|FC327609
genomic: TAGCTGTACTTgtaagctggt ... ttgatgccagGTAAACAAGGGCACAGCGAGTGCTAGTGAAATTCTAGCGGGTGCTCTTAAG
EST: ATACTGATGGGGATTCAGCTATCTCTACCAAAGAGCCTCTAGCTGTACTT GTAAACAAGGGCACAGCGAGTGCTAGTGAAATTCTAGCGGGTGCTCTTAAGEST: gi|162192956|gb|FC371458.1|FC371458
genomic: ATACTGATGGGGATTCAGCTATCTCTACCAAAGAGCCTCTAGCTGTACTTgtaagctggt ... ttgatgccagGTAAACAAGGGCACAGCGAGTGCTAGTGAAATTCTAGCGGGTGCTCTTAAG
EST: ATACTGATGGGGATTCAGCTATCTCTACCAAAGAGCCTCTAGCTGTACTT GTAAACAAGGGCACAGCGAGTGCTAGTGAAATTCTAGCGGGTGCTCTTAAGEST: gi|162192955|gb|FC371457.1|FC371457
genomic: ATACTGATGGGGATTCAGCTATCTCTACCAAAGAGCCTCTAGCTGTACTTgtaagctggt ... ttgatgccagGTAAACAAGGGCACAGCGAGTGCTAGTGAAATTCTAGCGGGTGCTCTTAAG
EST: ATACTGATGGGGATTCAGCTATCTCTACCAAAGAGCCTCTAGCTGTACTT GTAAACAAGGGCACAGCGAGTGCTAGTGAAATTCTAGCGGGTGCTCTTAAGEST: gi|162224470|gb|FC399846.1|FC399846
genomic: ATACTGATGGGGATTCAGCTATCTCTACCAAAGAGCCTCTAGCTGTACTTgtaagctggt ... ttgatgccagGTAAACAAGGGCACAGCGAGTGCTAGTGAAATTCTAGCGGGTGCTCTTAAG
EST: ATACTGATGGGGATTCAGCTATCTCTACCAAAGAGCCTCTAGCTGTACTT GTAAACAAGGGCACAGCGAGTGCTAGTGAAATTCTAGCGGGTGCTCTTAAGEST: gi|37844425|gb|BJ602433.1|BJ602433
genomic: ATACTGATGGGGATTCAGCTATCTCTACCAAAGAGCCTCTAGCTGTACTTgtaagctggt ... ttgatgccagGTAAACAAGGGCACAGCGAGTGCTAGTGAAATTCTAGCGGGTGCTCTTAAG
EST: ATACTGATGGGGATTCAGCTATCTCTACCAAAGAGCCTCTAGCTGTACTN GTAAACAAGGGCACAGCGAGTGCTAGTGAAATTCTAGCGGGTGCTCTTAAG
genomic: ATACTGATGGGGATTCAGCTATCTCTACCAAAGAGCCTCTAGCTGTACTTgtaagctggt ... ttgatgccagGTAAACAAGGGCACAGCGAGTGCTAGTGAAATTCTAGCGGGTGCTCTTAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGCGTCATTGTCTACATTGCAGACAGCATGGGCGTTCGAGATATTTATGATACTGATGGGGATTCAGCTATCTCTACCAAAGAGCCTCTAGCTGTACTTgtaagctggttcaagtatctctttccagtttaacttgctctgaggcaccattaattgtagaagtttttatatgtaagcaatttgattatcttgtggattt
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