1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACTACTGACGGGCTCTATCTTAGCTCACGAACTTATGCATGCCTGGCTTCGTCTGCAAGgtaagtttgcaatcggaagcaattcaatttatgatagtatcttcaatttactcccttttatgatcttttcttctagagttgcctatactgcggtttttgagcactggtgtgatgaatctgtgatgccaaccgtctgcag
species | Physcomitrella patens |
transcript | PP1S194_154V6.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGGCTCTATCTTAGCTCACGAACTTATGCATGCCTGGCTTCGTCTGCAAG TGCCGAATTTCCCACACATGCGCCCTGAAGTTGAGGAGGGTATATGCCAAGEST: gi|162251436|gb|FC427701.1|FC427701
genomic: GGGCTCTATCTTAGCTCACGAACTTATGCATGCCTGGCTTCGTCTGCAAGgtaagtttgc ... ccgtctgcagTGCCGAATTTCCCACACATGCGCCCTGAAGTTGAGGAGGGTATATGCCAAG
EST: GGGCTCTATCTTAGCTCACGAACTTATGCATGCCTGGCTTCGTCTGCAAG TGCCGAATTTCCCACACATGCGCCCTGAAGTTGAGGAGGGTATATGCCAAGEST: gi|162202269|gb|FC378112.1|FC378112
genomic: GGGCTCTATCTTAGCTCACGAACTTATGCATGCCTGGCTTCGTCTGCAAGgtaagtttgc ... ccgtctgcagTGCCGAATTTCCCACACATGCGCCCTGAAGTTGAGGAGGGTATATGCCAAG
EST: GGGCTCTATCTTAGCTCACGAACTTATGCATGCCTGGCTTCGTCTGCAAG TGCCGAATTTCCCACACATGCGCCCTGAAGTTGAGGAGGGTATATGCCAAGEST: gi|37849179|gb|BJ607187.1|BJ607187
genomic: GGGCTCTATCTTAGCTCACGAACTTATGCATGCCTGGCTTCGTCTGCAAGgtaagtttgc ... ccgtctgcagTGCCGAATTTCCCACACATGCGCCCTGAAGTTGAGGAGGGTATATGCCAAG
EST: GGGCTCTATCTTAGCTCACGAACTTATGCATGCCTGGCTTCGTCTGCAAG TGCCGAATTTCCCACACATGCGCCCTGAAGTTGAGGAGGGTATATGCCAAGEST: gi|37844792|gb|BJ602800.1|BJ602800
genomic: GGGCTCTATCTTAGCTCACGAACTTATGCATGCCTGGCTTCGTCTGCAAGgtaagtttgc ... ccgtctgcagTGCCGAATTTCCCACACATGCGCCCTGAAGTTGAGGAGGGTATATGCCAAG
EST: GGGCTCTATCTTAGCTCACGAACTTATGCATGCCTGGCTTCGTCTGCAAG TGCCGAATTTCCCACACATGCGCCCTGAAGTTGAGGAGGGTATATGCCAAGEST: gi|37849460|gb|BJ607468.1|BJ607468
genomic: GGGCTCTATCTTAGCTCACGAACTTATGCATGCCTGGCTTCGTCTGCAAGgtaagtttgc ... ccgtctgcagTGCCGAATTTCCCACACATGCGCCCTGAAGTTGAGGAGGGTATATGCCAAG
EST: GGGCTCTATCTTAGCTCACGAACTTATGCATGCCTGGCTTCGTCTGCAAG TGCCGAATTTCCCACACATGCGCCCTGAAGTTGAGGAGGGTATATGCCAAG
genomic: GGGCTCTATCTTAGCTCACGAACTTATGCATGCCTGGCTTCGTCTGCAAGgtaagtttgc ... ccgtctgcagTGCCGAATTTCCCACACATGCGCCCTGAAGTTGAGGAGGGTATATGCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTACTGACGGGCTCTATCTTAGCTCACGAACTTATGCATGCCTGGCTTCGTCTGCAAGgtaagtttgcaatcggaagcaattcaatttatgatagtatcttcaatttactcccttttatgatcttttcttctagagttgcctatactgcggtttttgagcactggtgtgatgaatctgtgatgccaaccgtctgcag
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