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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACGATGAAGCAGAGCGGAGGAGGGAAATGGCTAAGAACTCTCTTGAACGCTACACACATTACTATGAACGTTGGGCTACAAATGAGTCTgtaagtgctggattgcgtttgtgcattttttcttttgtcattcggtaatgaatctgcatgaactgtttaggattttgacatcatcctaacttgaggagatgtggtctgcatttgtttattcttgactatcgagagtttggtggtgttgtgcag

Basic information

species Physcomitrella patens
transcript PP1S178_72V6.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S178_72V6.2 (Physcomitrella patens), 5'ss of exon 11
lower sequence: GRMZM5G876621_T01 (Zea mays), 5'ss of exon 10
TACGATGAAGCAGAGCGGAGGAGGGAAATGGCTAAGAACTCTCTTGAACGCTACACACATTACTATGAACGTTGGGCTACAAATGAGTCTgtaagtgctggattgcgtttgtgcattttttcttttgtcattcggtaatgaatctgcatgaactgtttaggattttgacatcatcctaacttgaggagatgtggtctgcatttgtttattcttgactatcgagagtttggtggtgttgtgcag
|| |||||| | ||  |||| || |||||||| |||||||| |||||  | ||||||||||| |||||||| |||||  | ||| |||| ||||||  || ||   |||   |     |     ||              ||||| ||| | |    | |  ||    ||   |   || |||| |  |||    |||  | ||||                                     
TATGATGAATCTGAAAGGAGAAGAGAAATGGCAAAGAACTCCCTTGAGAGATACACACATTATTATGAACGATGGGCAGCCAATCAGTCGgtaagtattgaatgtggttgaagtgacctgaaactt------------caaatctacattagca---tggagttcattcagagtgacaa-ttgatgc-atgccagctgt-tctgttgg-----------------------------------

upper sequence: PP1S178_72V6.2 (Physcomitrella patens), 5'ss of exon 11
lower sequence: EFJ15174 (Selaginella moellendorffii), 5'ss of exon 10
TACGATGAAGCAGAGCGGAGGAGGGAAATGGCTAAGAACTCTCTTGAACGCTACACACATTACTATGAACGTTGGGCTACAAATGAGTCTgtaagtgctggattgcgtttgtgcattttttcttttgtcattcggtaatgaatctgcatgaactgtttaggattttgacatcatcctaacttgaggagatgtggtctgcatttgtttattcttgactatcgagagtttggtggtgttgtgcag
||||||||||| ||| ||||||| |||||||||||||||||  | ||  | || ||||||||||| || || ||||| || || || || ||      |  | |  |  | |    |    ||||     |||| | |||   | |                                                                                                 
TACGATGAAGCTGAGAGGAGGAGAGAAATGGCTAAGAACTCGTTAGAGAGATATACACATTACTACGAGCGATGGGCCACGAACGAATCAgttgagtttccaatttgagtatctgataggcctttctaacttcgttcatggtacag-------------------------------------------------------------------------------------------------

upper sequence: PP1S178_72V6.2 (Physcomitrella patens), 5'ss of exon 11
lower sequence: EFJ08409 (Selaginella moellendorffii), 5'ss of exon 10
TACGATGAAGCAGAGCGGAGGAGGGAAATGGCTAAGAACTCTCTTGAACGCTACACACATTACTATGAACGTTGGGCTACAAATGAGTCTgtaagtgctggattgcgtttgtgcattttttcttttgtcattcggtaatgaatctgcatgaactgtttaggattttgacatcatcctaacttgaggagatgtggtctgcatttgtttattcttgactatcgagagtttggtggtgttgtgcag
||||||||||| ||| |||||||||||||||||||||||||  | ||  | || ||||||||||| || || ||||| || || || || ||      |  | |  |  | |    |    ||||     |||| | |||   | |                                                                                                 
TACGATGAAGCTGAGAGGAGGAGGGAAATGGCTAAGAACTCGTTAGAGAGATATACACATTACTACGAGCGATGGGCCACGAACGAATCAgttgagtttccaatttgagtatctgataggcctttctaacttcgctcatggtacag-------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22132083|gb|BQ826972.1|BQ826972
EST:     CTCTTGAACGCTACACACATTACTATGAACGTTGGGCTACAAATGAGTCT                         TCTAGGTCAAAGGCTCTTGCAGATCTTCAACTAATGCAGTCTGTGAAGGTT
genomic: CTCTTGAACGCTACACACATTACTATGAACGTTGGGCTACAAATGAGTCTgtaagtgctg ... tgttgtgcagTCTAGGTCAAAGGCTCTTGCAGATCTTCAACTAATGCAGTCTGTGAAGGTT
EST: gi|162233180|gb|FC409003.1|FC409003
EST:     CTCTTGAACGCTACACACATTACTATGAACGTTGGGCTACAAATGAGTCT                         TCTAGGTCAAAGGCTCTTGCAGATCTTCAACTAATGCAGTCTGTGAAGGTT
genomic: CTCTTGAACGCTACACACATTACTATGAACGTTGGGCTACAAATGAGTCTgtaagtgctg ... tgttgtgcagTCTAGGTCAAAGGCTCTTGCAGATCTTCAACTAATGCAGTCTGTGAAGGTT